Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211457g00008 ATGGGGTCTCAAGGTGGTGGTGGTGAAAGTAATGGTAAACATGCACAGCTCCAGCCTTTGGCGCGGCAAAACTCGTTGTACACTCTCACGCTCGATGAGGTTCAGAATCAATTAGGTGACTTAGGAAAGCCCCTAGCTAGTATGAACCTCGATGAGCTTCTAAAAAATGTATGGACTGCCGAGGCCAACCAGTCTTTAGGTATGGACATTGACCGCACAACACAAGCCAATCAAGCTGCACTGCAGCATCAATCTAGTCTATCAATAACTAGTGCACTAGGCAAGAAGACAGTTGATGAGGTTTGGAGAGATATCCAGCAAAATAAAGATAATAACGAGAAGAAGTCTCGAGAGAGACAAGCTACATTAGGAGAGATGACATTGGAGGCTTTCTTGGCGAAAGCAGGGGTCGGAATTGTTGTCGAACCATCATGTAATACTAAAAGTGCCGGTCCTTTAGCTGTTGCTGATTCTAATTTAACAGCACCACCATTTCCTCCACAAGGTCCAATGATGCAATATGCACAACCACCATATCAGCATCCTCAGCAAAGTTTAATGGGGATGTATATGACTGGCCAGAACATAGCACAACCGTTGCACATGGGGGCTGGTGGTGCTTTGGATGTTCCATATGCTGATGGTCAGGTGGCAATGCCATCACCTTTGATGGGAACCTTGTCCGATACGAAGATACCTGGTAGGAAAAGGGGGACACCGGAGGACATAATGGAGAAGACGGTCGAAAGGAGGCAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCTCGTTCTAGAGCAAGGAAGCAGGCTTACACAACTGAATTAGAGAATAAAGTGTCGCGCTTGGAAGAGGAAAATGAAAAGCTGAGGAAACGAAAGGAGCTAGAGAACATGTTGTCTAGTGCACCCCCACCACCGCAACCCCGATACCAGATTCGCCGAACATCATCCGCGTCGTTCTGA 966 0.471 MGSQGGGGESNGKHAQLQPLARQNSLYTLTLDEVQNQLGDLGKPLASMNLDELLKNVWTAEANQSLGMDIDRTTQANQAALQHQSSLSITSALGKKTVDEVWRDIQQNKDNNEKKSRERQATLGEMTLEAFLAKAGVGIVVEPSCNTKSAGPLAVADSNLTAPPFPPQGPMMQYAQPPYQHPQQSLMGMYMTGQNIAQPLHMGAGGALDVPYADGQVAMPSPLMGTLSDTKIPGRKRGTPEDIMEKTVERRQKRMIKNRESAARSRARKQAYTTELENKVSRLEEENEKLRKRKELENMLSSAPPPPQPRYQIRRTSSASF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211457g00008 321 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 253 268 IPR004827 GO:0003700|GO:0006355
Stsc211457g00008 321 Gene3D - 248 302 - -
Stsc211457g00008 321 Pfam bZIP transcription factor 250 295 IPR004827 GO:0003700|GO:0006355
Stsc211457g00008 321 CDD bZIP_plant_BZIP46 250 296 - -
Stsc211457g00008 321 SUPERFAMILY Leucine zipper domain 250 295 IPR046347 GO:0003700|GO:0006355
Stsc211457g00008 321 MobiDBLite consensus disorder prediction 251 321 - -
Stsc211457g00008 321 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 248 293 IPR004827 GO:0003700|GO:0006355
Stsc211457g00008 321 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 20 319 IPR043452 GO:0003700|GO:0045893
Stsc211457g00008 321 Coils Coil 266 300 - -
Stsc211457g00008 321 MobiDBLite consensus disorder prediction 251 298 - -
Stsc211457g00008 321 SMART brlzneu 246 302 IPR004827 GO:0003700|GO:0006355
Stsc211457g00008 321 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 248 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211457g00008 Stsc-Chr211457 38281 42706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211457g00008 13 321 bZIP Transcription Factor Family AT3G56850 51.411 7.99e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc211457g00008 bZIP_1 2e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211457g00008 K14432 - gmx:100784924 441.425