Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211457g00005 ATGTTACTCTCACTTTTCTCTTCTTTCTTATCCCTCCTCTTCCTCCTCTTTTTCTTCACACCATTACTCCTAGCTCAACCTCCATCTCCCTCCTCCTCTTCTTCTGCTTGCAAGTCAACATTGTACCCCAAACTCTGCCGTACAATACTCTCCACAATTCGAAACTCTCCTTCTGATCCGTACGGTTACGGCAAGTTCTCCGTCAAACAGTCTCTCAAACAGGCCACAAAGCTCGCTAAAGTCTTCAACGACTTTCTCGACCGCCACAACAACAACAACCGCCGCCAATCCCACTCCTCTTCCTCTCTAAACAATGCTGAGGTCTCTGCATTCACGGACTGCAGAGACCTCAACGAGCTCAACGTGGACTACCTCTCGTCCATCTCCGCTGAGCTCAAATACGCCAACAGTAACAACGGCGCCGCGGAGCTCGTTGACAAGATCGAGAGTTATCTCTCCGCCGTGGCCACCAACCACGAGACATGCTACGACGGGTTGGTGGCCACGAAAGGCGGGATCGGAAACGCGCTCGCGGCGCCGTTGAAGGATGCGACACAGCTGTATAGTGTGTCGCTTGGGTTGGTGAGTGTGGCTCTTGATAAGAATCTGAAGAAGAATAGTTACAAGACCCGCAAACATGGGCTTCCCAACAAGAACTTCAAGGTCAGGCAGCCACTTGAGAAGCTCATTCAGCTTCTCCGAACAAAGTATAGTTGCAAGAACTTATGGAATAATTGTACTAGAAGTGAAAGGATTCTGAAAGAAAGCAAAAGCTCAGGGATTCTATTGAAAGATTATGTGATTGTGAGCCATTATGATGGGAGAGATAACTACAGTTCAATTGGAGAAGCCATTGCTTCTGCGCCAAACAACATAAAGCCAGAAGATGGGTATTTCCTTGTGTATGTTAGAGAAGGGTATTATGAAGAATATGTTGTTGTTCCAAAAGAAAAGAAGAACATTTTGCTAATTGGAGATGGTATCAACAAGACTATCATCACAGGCAACCATAGTGTCATTGATGGTTGGAGTACTTTCAATTCTTCCACTTTTGCTGTTAGTGGAGAAAGATTTCTTGCGGTGGACGTTACCTTCAGAAACACGGCAGGGCCGGAAAAACACCAAGCAGTGGCGGTGAGGAACAACGCTGACCTCTCCACCTTCTACCGGTGCAGCTTTGAAGGCTACCAAGACACCCTCTACGTCCATTCCCTAAGACAATTCTACAGAGAATGCGATATTTTCGGCACCGTTGACTTTATCTTTGGTAACGCAAGAGTAGTTTTTCAAAACTGCAACATTTATGCTAGACAACCAATGGACAACCAAAAGAACGCTGTGACCGCACAAGGACGAACCGATCCGAATCAAAACACCGGAATCTCGATCCATAACTGCACGATTAATGCGGCACCGGACTTGAATATTTCTTCCACCTTGACCTACCTAGGTAGGCCATGGAAGAACTATTCGAGGACGGTGTATTTGCAGTCTTATATTGGTGATCTGATTGAACCTTCTGGGTGGTTAGAATGGAATGGAACATTTGGGTTAGATACTTTGTTTTATGGAGAATTTAATAACTATGGACCTGGTTCTAACACTTCCAACAGAGTTCAATGGCCTGGCTATGTGATCTTGAATGCTACACAAGCTTCCAACTTTACTGTTCTTAACTTTACTTTGGGGGATGCATGGCTTCCAGATACTGATATACCCTACACTGAAGGCTTGCTGAATTAA 1743 0.4555 MLLSLFSSFLSLLFLLFFFTPLLLAQPPSPSSSSSACKSTLYPKLCRTILSTIRNSPSDPYGYGKFSVKQSLKQATKLAKVFNDFLDRHNNNNRRQSHSSSSLNNAEVSAFTDCRDLNELNVDYLSSISAELKYANSNNGAAELVDKIESYLSAVATNHETCYDGLVATKGGIGNALAAPLKDATQLYSVSLGLVSVALDKNLKKNSYKTRKHGLPNKNFKVRQPLEKLIQLLRTKYSCKNLWNNCTRSERILKESKSSGILLKDYVIVSHYDGRDNYSSIGEAIASAPNNIKPEDGYFLVYVREGYYEEYVVVPKEKKNILLIGDGINKTIITGNHSVIDGWSTFNSSTFAVSGERFLAVDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIFGTVDFIFGNARVVFQNCNIYARQPMDNQKNAVTAQGRTDPNQNTGISIHNCTINAAPDLNISSTLTYLGRPWKNYSRTVYLQSYIGDLIEPSGWLEWNGTFGLDTLFYGEFNNYGPGSNTSNRVQWPGYVILNATQASNFTVLNFTLGDAWLPDTDIPYTEGLLN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211457g00005 580 ProSitePatterns Pectinesterase signature 2. 414 423 IPR033131 -
Stsc211457g00005 580 Pfam Pectinesterase 269 563 IPR000070 GO:0030599|GO:0042545
Stsc211457g00005 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 197 IPR035513 -
Stsc211457g00005 580 CDD PMEI-like_3 36 196 - -
Stsc211457g00005 580 FunFam Pectinesterase 262 578 - -
Stsc211457g00005 580 SUPERFAMILY Pectin lyase-like 264 577 IPR011050 -
Stsc211457g00005 580 Pfam Plant invertase/pectin methylesterase inhibitor 34 193 IPR006501 GO:0004857
Stsc211457g00005 580 NCBIfam pectinesterase inhibitor domain 4 189 IPR006501 GO:0004857
Stsc211457g00005 580 PANTHER PECTINESTERASE 15 568 - -
Stsc211457g00005 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 198 IPR035513 -
Stsc211457g00005 580 SMART PMEI_2 28 194 IPR006501 GO:0004857
Stsc211457g00005 580 Gene3D - 266 580 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211457g00005 Stsc-Chr211457 18570 23641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211457g00005 36 580 Carbohydrate Esterase AT3G10720 60.617 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211457g00005 K01051 - gmx:100816503 866.3