Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211457g00004 ATGTCTTCCTTCAAATCATACGGCAAAGTTGATGAACAAGACCAAATGCTGCACCAAATTACCAAAATGAAAACCCGAAAGAGAATCATAATCATAAGCCTCTCCTCAATAATCCTCGTTGGTGTTGTCATTGCTGCTGTGTTTGGAATACTCAATAATTCTCCAGATCATAATAATAACTCATCACAACAACATGGGGGTTCACTGGTGGCTACGTCGGTGAAGGCGATTTGTGACGTGACACTTTACAAGGAATCATGTTACAGGAGCCTCAGCTCTGTTGTGAACTCATCAACTGGGGAGGTTCAGCCAGAGGAGCTATTAAAGTTGTCTATTAAGGTGGCCTTAGAAGAAGTGTCAAATGTTGTTAACAAGTATTTCTCTTCTAGTGGGGGGCATAATGGACATTTCCAAGGATTGAATAATTTTGGTAGGGAAAAGGAAGCTTTGGATAATTGTAGAGAGCTTTTGGATCTTGCAGTTGATCATCTTAATAACTCTTTGTCTTCTGTTGAAGCCTCTTCCCTTTTTGACATCTTTGATGATCTTCAAACGTGGCTAAGTGCTGCAGGTACATACCAACAAACTTGCATTGAAGGCTTTGATGAAGCAAAAGAATCACTAAAAATGGTCGCAACAAACTACCTTAAAAACTCAACAGAGTTCACCAGTAACAGTCTGGCCATCATCACCTGGATCAACAAGGCAGCCGCAACCGCCATGGTGACTCAGCGACGCTTGCTGACGAGCTCATCGTTTCCAGAGTGGCTTCATTCCAATGACAGGAAGCTACTTGGAAATAATAAAAATGATTTGAAGTTGAAAAGTGAGACTATTGTTGTGGCAAAAGATGGGAGTGGGAAATACAAGAGAATCTCTGAAGCATTGAAGCATGTTCCAGATAAGAGTAATAAGAGGACAGTGATTTATGTGAAGAGAGGTGTTTACTATGAGAATGTGAGAGTTGAGAAGAACAAATGGAATGTCATGATGATTGGTGATGGCATGACTTCTACTATTGTCTCTGGCAGCCTTAACTTTGTTGATGGCACAACAACCTTTTCAACTGCTACTTTTGGTGTGTTTGGAAAGAATTTCATAGCAAGAGACATGGGATTCAGAAACACAGCAGGTCCAGAGAAGCACCAAGCAGTAGCACTAATGACAACTGGTGATGAAGCTGTTTACTACAGATGCCACATTGATGCATTCCAAGACACACTCTATGCTCATTCCAACCGCCAATTCTACAGAGAATGCAACATCTATGGCACTGTTGATTTCATCTTTGGCAACTCCGCTGTTGTCTTCCAAAACTGCAACATCTTCCCGAAGTTACCAATCCATGGCCAGCAGAACACTATCACTGCACAAGGCAAAACTGATCCCAACATGAACACAGGCATCTCAATCCACAACTCCAAGATTTCAGGGTTTGGGAACTTGAGTTCTGTCCAAACTTACTTGGGTAGGCCATGGAAGAATTACTCAACTACAGTGTACATTAGATCCAAGATGGAAGCCATTGTTGAGCCTAGTGGATGGTTACCTTGGGTTGGAAACTCAGCACCAGACACCATTTTTTATGCTGAATTTGAGAACTTTGGACCAGGGGCTTCTACTTTAAATAGAGTGAAGTGGAAGGGCTTGAGAGCTATTTCTTTTAAACAAGCTAGCAAGTTTTCAGTGAAGGCTTTTCTTGGAGGCCAGAGATGGATTCCTGCATCTTCTGCTCCTTTTAAGTCTGATCTCTGA 1755 0.4182 MSSFKSYGKVDEQDQMLHQITKMKTRKRIIIISLSSIILVGVVIAAVFGILNNSPDHNNNSSQQHGGSLVATSVKAICDVTLYKESCYRSLSSVVNSSTGEVQPEELLKLSIKVALEEVSNVVNKYFSSSGGHNGHFQGLNNFGREKEALDNCRELLDLAVDHLNNSLSSVEASSLFDIFDDLQTWLSAAGTYQQTCIEGFDEAKESLKMVATNYLKNSTEFTSNSLAIITWINKAAATAMVTQRRLLTSSSFPEWLHSNDRKLLGNNKNDLKLKSETIVVAKDGSGKYKRISEALKHVPDKSNKRTVIYVKRGVYYENVRVEKNKWNVMMIGDGMTSTIVSGSLNFVDGTTTFSTATFGVFGKNFIARDMGFRNTAGPEKHQAVALMTTGDEAVYYRCHIDAFQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVFQNCNIFPKLPIHGQQNTITAQGKTDPNMNTGISIHNSKISGFGNLSSVQTYLGRPWKNYSTTVYIRSKMEAIVEPSGWLPWVGNSAPDTIFYAEFENFGPGASTLNRVKWKGLRAISFKQASKFSVKAFLGGQRWIPASSAPFKSDL 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211457g00004 584 Pfam Pectinesterase 279 569 IPR000070 GO:0030599|GO:0042545
Stsc211457g00004 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 233 IPR035513 -
Stsc211457g00004 584 ProSitePatterns Pectinesterase signature 2. 422 431 IPR033131 -
Stsc211457g00004 584 PANTHER PECTINESTERASE 38 574 - -
Stsc211457g00004 584 CDD PMEI-like_3 76 235 - -
Stsc211457g00004 584 NCBIfam pectinesterase inhibitor domain 71 233 IPR006501 GO:0004857
Stsc211457g00004 584 FunFam Pectinesterase 273 584 - -
Stsc211457g00004 584 SUPERFAMILY Pectin lyase-like 276 580 IPR011050 -
Stsc211457g00004 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 71 234 IPR035513 -
Stsc211457g00004 584 Gene3D - 274 584 IPR012334 -
Stsc211457g00004 584 FunFam Pectinesterase 70 234 - -
Stsc211457g00004 584 Pfam Plant invertase/pectin methylesterase inhibitor 73 229 IPR006501 GO:0004857
Stsc211457g00004 584 SMART PMEI_2 69 229 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211457g00004 Stsc-Chr211457 14835 18134 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211457g00004 7 584 Carbohydrate Esterase AT3G10710 53.966 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211457g00004 - - gmx:100811152 806.594