Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211456g00008 ATGGTGCTAGGTTGGAGTAGAAGGAGAAATAATCACAAGAAGGCTAATAATAATAATAAGAATGGAGGAAAACCAAACATGGAGCTAGTGATTCCAAACCATTTCAGGTGCCCAATTTCCTTAGACCTCATGAAAGATCCTGTGACATTATCAACCGGCATAACATATGACAGAGAAAGCATTGAAACATGGTTTGATGATGGAAACTTCACCTGCCCTGTCACAAACCAGATTGTCAAGAACTTTGACATGATCCCAAACCATTCCCTCAGGATGATGATCCAAGATTGGTGTGTGGAGAATAGGCAGCATGGTGTTGAGAGGATCCCAACACCAAGGATCCCCATTAGCCCGACCGATGTCTCGAATCTTCTGCTGCAAGTTAAGGAATCTTCGCGGCGATTGGATCAGCTTACTTGCCTTGATTTGGTTCTGAAGATGGAGAGATGGGGTGCTGAGAGCGAAAGGAACAAGAGGATCATTGTTGATAATGGAGCACCAGCTTCATTGGCCTCAGCATTTGATGCATTCGCAGGTGATTCGGTTGAGAGGAATGTGGGTGTTCTTGATGAGATCCTTTCAGCACTGAAATGGATGTTCCCGCTTCAATTGGAGGCTCAGAAATCATTGGGGTCTCATGCATCATTGAGCTGCATGGTTTGGTTCTTGAAGCACCAAGACCTCCCTGGTAAAGAAAAATCCATTGCTGCATTGAAGGAGCTTCTCTCCTTTGGTGACAAGAACAATGTTGAGGCACTCTCACAGATTGAAGGAGTCAACGAGCTCTTGGTTGAATTGGTCAACAAGAGAATTAGTCCAACAATCACAAAGAATTCACTCAGGGTAATCTGGCACATGGTTTCATCAGAAAGTGAATGTGGTGAGAAGATGAAGATCTCATTTGTGGAACTGGGTTTTGTGAATACCCTTTTGGGGATCCTAATTGATTCAGAAAAGAGCATTTGTGAGAAGGCTTTGGCAATCTTTGATTGTCTTTGCAGCTGTGAGAAAGGGAGAGAAAGTGCTTTTGGGAATGATCTAACTGTTCCTGTTCTGGTGAAGAAGGTTCTGAGGATCTCTTCACTCAGCACTGATTACTCTGTGTCTGCAATATGGAAGATGTGTAAATTTGGTGAAGAAGAAGGGAAGGTTCTTGTTGAGGCTCTTCAAGTTGGTGCATTCCAGAAGCTTCTTCTGGTATTGCAGGTTGGTTGTGGTGATTCTACAAAGGAGAAAGCCACTGAGCTTCTCAAGATGATGAATCCTTACAGGGCTGAATTGGAATGCATTGATTCTGATTTCAAGAATCTCAAGAGATCCTTCTAA 1326 0.4329 MVLGWSRRRNNHKKANNNNKNGGKPNMELVIPNHFRCPISLDLMKDPVTLSTGITYDRESIETWFDDGNFTCPVTNQIVKNFDMIPNHSLRMMIQDWCVENRQHGVERIPTPRIPISPTDVSNLLLQVKESSRRLDQLTCLDLVLKMERWGAESERNKRIIVDNGAPASLASAFDAFAGDSVERNVGVLDEILSALKWMFPLQLEAQKSLGSHASLSCMVWFLKHQDLPGKEKSIAALKELLSFGDKNNVEALSQIEGVNELLVELVNKRISPTITKNSLRVIWHMVSSESECGEKMKISFVELGFVNTLLGILIDSEKSICEKALAIFDCLCSCEKGRESAFGNDLTVPVLVKKVLRISSLSTDYSVSAIWKMCKFGEEEGKVLVEALQVGAFQKLLLVLQVGCGDSTKEKATELLKMMNPYRAELECIDSDFKNLKRSF 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211456g00008 441 CDD RING-Ubox_PUB 32 84 IPR045210 -
Stsc211456g00008 441 MobiDBLite consensus disorder prediction 1 26 - -
Stsc211456g00008 441 SUPERFAMILY ARM repeat 152 418 IPR016024 -
Stsc211456g00008 441 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Stsc211456g00008 441 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Stsc211456g00008 441 PANTHER WDSAM1 PROTEIN 28 421 IPR045185 GO:0061630
Stsc211456g00008 441 FunFam RING-type E3 ubiquitin transferase 31 102 - -
Stsc211456g00008 441 SUPERFAMILY RING/U-box 29 107 - -
Stsc211456g00008 441 Gene3D - 122 421 IPR011989 -
Stsc211456g00008 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 109 IPR013083 -
Stsc211456g00008 441 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211456g00008 Stsc-Chr211456 88719 90326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211456g00008 5 441 U-box Gene Family AT5G37490 43.991 1.38e-116 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211456g00008 - - gmx:100794340 673.7