Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211456g00003 ATGGCCCTCGTCCGCCATCGCCGCCACCTTAATCTCCGCCTCCCCCTTCCAGAACCTTCCGAACGCTGTCTATGCTTCCCTCTCCCGCAAGCCACAACCGCCGCCAAATCCTTCTCCACAACCGCCGCCTCTTCCGGTGACGCTATCTTCCCCGGCGACATCGAGAAACTAGAGGTTCTCGGCCACGGCAACGGCGGCACAGTCTACAAGGTCCGCGATAAGCGAACCTCGGCGATCTACGCTCTCAAAGTCGTACACTCCAGCTCCGACGCTACAACGCGCCGCCGCATCAAGACAGAAACCGAGATCCACAGCCGCGCCGCCGACTCACCTTACGTCGTCCGCTACCATGGCTCCTTCGAGAGCCCGCTCTCCGGCGACGTCGCCATCCTAATGGAGTACATGGACTCCGGCACGCTGGAAACTCTCTTGAAAACAAAAGGCACGTTTGACGAAGCCTCGCTGGCAAAGGTGGCGCGTGACGTTCTTAACGGTCTTAACTACCTCCACGCGCGGAATATCGTGCACCGCGACATAAAGCCCGCGAACCTACTCGTGAATAGCAAGAATGAGGTCAAGATTGGTGATTTTGGTGTGAGTAAGCTCATGTGCCGCACGCTCGACCCGTGCAAATCCTACGTCGGCACGTGCGCCTACATGAGCCCGGAGCGGTTCGACCCGGACGCATATGGCGGGAACTATAACGGATATGCAGCGGATATATGGAGCCTGGGCCTGACCCTGCTGGAGCTTTACATGGGTCACTTCCCGTTGCTCCAAGAGGGTCAGAGGCCGGATTGGGCCACCCTAATGTGGGCTATTTGTTTCGGGGAGCGGCCGAGTTTGCCTGAAGGTGTCTCGGCCGAGTTCCGGGACTTTGTTGAGTGTTGCTTAAAGAAGGAGTCTAGCGAGAGATGGACGGCTCCTCAGCTCTTGACCCATCCGTTTCTTTGCAAGAATGACCCGGAAGCTTAG 975 0.5805 MALVRHRRHLNLRLPLPEPSERCLCFPLPQATTAAKSFSTTAASSGDAIFPGDIEKLEVLGHGNGGTVYKVRDKRTSAIYALKVVHSSSDATTRRRIKTETEIHSRAADSPYVVRYHGSFESPLSGDVAILMEYMDSGTLETLLKTKGTFDEASLAKVARDVLNGLNYLHARNIVHRDIKPANLLVNSKNEVKIGDFGVSKLMCRTLDPCKSYVGTCAYMSPERFDPDAYGGNYNGYAADIWSLGLTLLELYMGHFPLLQEGQRPDWATLMWAICFGERPSLPEGVSAEFRDFVECCLKKESSERWTAPQLLTHPFLCKNDPEA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211456g00003 324 SUPERFAMILY Protein kinase-like (PK-like) 51 321 IPR011009 -
Stsc211456g00003 324 Gene3D Phosphorylase Kinase; domain 1 29 136 - -
Stsc211456g00003 324 Gene3D Transferase(Phosphotransferase) domain 1 138 324 - -
Stsc211456g00003 324 Pfam Protein kinase domain 55 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211456g00003 324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Stsc211456g00003 324 ProSiteProfiles Protein kinase domain profile. 54 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211456g00003 324 FunFam Mitogen-activated protein kinase 2 137 324 - -
Stsc211456g00003 324 SMART serkin_6 54 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211456g00003 324 CDD PKc_MAPKK_plant_like 53 317 - -
Stsc211456g00003 324 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 48 320 - -
Stsc211456g00003 324 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211456g00003 Stsc-Chr211456 43022 43996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211456g00003 1 317 MAP Kinase Kinase Gene Family AT1G73500 62.461 3.64e-130 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Stsc211456g00003 Pkinase 6.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211456g00003 K20604 - gmx:100804100 465.692