Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211455g00047 ATGGCAGCAAGCACTGGTAGCATTCCATCTCACATAAAAGCTTGGGTGTACAATGAATATGGGAACATTGAAGACACTCTCAAGCTTGACACAAACATAGCTATACCAGAACTCAAGGATGACCAGGTTCTCATCAAGGTTCTGGCTGCTGCCCTTAACCCTGTAGATTACAAGAGGGCCCTTGGACTTTTCAAGGACACTGACTCTTCATTCCCAACAGCTCCAGGGTATGATGTTGCTGGTGTGGTGGTGAAAGTAGGAAGCAACGTGAAGAAATTTAAGGTTGGAGATGAAGTTTATGGTGATATCAATGAGAGTGCTGTGAAGCCAAAGGCTACTGGGAGCTTAGCAGAGTATACAAGTGCTGAAGAGAAGGTGTTGGCTCACAAACCTTCTAATTTGAGCTTTGTTGAAGCTGCTAGCCTCCCTTTAGCTATCATCACTGCCTATCAAGGTATTGAGAGAGCTCAATTTTCTGCTGACAAATCTATTCTTGTTCTTGGAGGTGCTGGTGGAGTTGGAAGCCTTGTTATTCAGCTAGCAAAGCAAGTATTTGGTGCATCAAAGGTAGCAGCTACTGCTAGTACTGGAAAATTGGAGCTGTTAAGGGAGTTAGGAGTAGACTTGCCTATTGATTATACAAAGGAAAATTTTGAAGAGTTGCCAGAAAAGTTTGATTTTGTGTATGACACAGTAGGACAAAGTGAGAGGGCATTGAAGGCTGTCAAAGAAGGAGGACAAGTAATAACAATAGCAGGACCTGCAACTCCACCTGCAATATGGTTCTTTCTCACTTCAGATGGTGGTGTGTTAGAGAAACTGAGACCTTATTTAGAGAGTGGAAAGGTGAAGGCAGTGTTGGACCCAAAGAGCCCTCTTCCATTTTCAAAGGTGATAGAAGCATTTGCCTACCTCAAGACCAACAGAGCCACTGGAAAACTTGTTATATATCCAATCCCATAA 963 0.432 MAASTGSIPSHIKAWVYNEYGNIEDTLKLDTNIAIPELKDDQVLIKVLAAALNPVDYKRALGLFKDTDSSFPTAPGYDVAGVVVKVGSNVKKFKVGDEVYGDINESAVKPKATGSLAEYTSAEEKVLAHKPSNLSFVEAASLPLAIITAYQGIERAQFSADKSILVLGGAGGVGSLVIQLAKQVFGASKVAATASTGKLELLRELGVDLPIDYTKENFEELPEKFDFVYDTVGQSERALKAVKEGGQVITIAGPATPPAIWFFLTSDGGVLEKLRPYLESGKVKAVLDPKSPLPFSKVIEAFAYLKTNRATGKLVIYPIP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211455g00047 320 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 3 320 IPR044626 GO:0016628
Stsc211455g00047 320 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 161 182 IPR002364 GO:0008270|GO:0016491
Stsc211455g00047 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 134 260 IPR036291 -
Stsc211455g00047 320 Gene3D - 19 316 - -
Stsc211455g00047 320 SMART PKS_ER_names_mod 21 316 IPR020843 GO:0016491
Stsc211455g00047 320 Gene3D - 153 267 - -
Stsc211455g00047 320 Pfam Zinc-binding dehydrogenase 205 316 - -
Stsc211455g00047 320 SUPERFAMILY GroES-like 9 168 IPR011032 -
Stsc211455g00047 320 CDD MDR_like_2 13 316 - -
Stsc211455g00047 320 Pfam Alcohol dehydrogenase GroES-like domain 41 106 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211455g00047 Stsc-Chr211455 341592 343422 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211455g00047 68 231 Monolignol Biosynthesis Gene Families AT1G72680 27.979 9.59e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211455g00047 K18980 - gmx:100791274 484.182