Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211455g00027 ATGATAAATGGAAAAGCCTCCGTCTCTAAGGAGCTTAATGCCAAGCACATCAAGATTTTAGAGGGAGTTGTTAGGCTACCTGACAATAGGGAATGTGCAGACTGCCGGAATAAGGCACCACGATGGGCAAGCGTGAACCTAGGAATTTTCATTTGCATGCAGTGTTCAGGAATTCACCGAAGTCTTGGAGTACACATATCACAGGTGCGGTCTACAACTTTGGATACATGGTTGCCGGAACAAGTGTCTTTCATGCAACTTATGGGTAATGTGAATGCCAATAAGTACTGGGAAGCAGAACTGCCGCCAAATTTTGACAGAAATGGATATGGAATCGACAAATTTATTCGTGCCAAGTATGTGGATAAAAAATGGGCTTCAAAACATGGTGGTCTACAAGCAGCAACTGCAAAGTCATCTGAAACAATGAGGAATAATCATCATCAAAGGAATAGAAGATTGTCTCTTGAGGAAAGCATTCTTGTTGGCCACATGCAACAAATTCATCGACACCCTCCCCAGCAACAAGGAACAAAATCTCATGAGATCCCGTTAGGTTTGGAAAGAAAGAAGAGTGCGCCACAAGTGAAGATCAGGGCGCCATCGGCATCCCTTGATTTTGATAGCATTGCTAGAAATAGACATACAACAACCGTTGATCTTTTTGCCTTTCTTAACATCAACGATAGTAATCAAAAGGCTGTCCTCTCATCAACTTCAACTCCTACAAGCTGGACAACATTTGATTGA 750 0.424 MINGKASVSKELNAKHIKILEGVVRLPDNRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSTTLDTWLPEQVSFMQLMGNVNANKYWEAELPPNFDRNGYGIDKFIRAKYVDKKWASKHGGLQAATAKSSETMRNNHHQRNRRLSLEESILVGHMQQIHRHPPQQQGTKSHEIPLGLERKKSAPQVKIRAPSASLDFDSIARNRHTTTVDLFAFLNINDSNQKAVLSSTSTPTSWTTFD 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211455g00027 249 FunFam stromal membrane-associated protein 1 isoform X1 2 130 - -
Stsc211455g00027 249 CDD ArfGap 20 120 - -
Stsc211455g00027 249 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 3 249 IPR044520 GO:0005096
Stsc211455g00027 249 Gene3D Arf GTPase activating protein 3 131 IPR038508 -
Stsc211455g00027 249 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Stsc211455g00027 249 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Stsc211455g00027 249 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Stsc211455g00027 249 SMART arf_gap_3 14 134 IPR001164 GO:0005096
Stsc211455g00027 249 SUPERFAMILY ArfGap/RecO-like zinc finger 18 127 IPR037278 -
Stsc211455g00027 249 ProSiteProfiles ARF GTPase-activating proteins domain profile. 14 133 IPR001164 GO:0005096
Stsc211455g00027 249 Pfam Putative GTPase activating protein for Arf 19 128 IPR001164 GO:0005096
Stsc211455g00027 249 MobiDBLite consensus disorder prediction 131 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211455g00027 Stsc-Chr211455 192529 194189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211455g00027 27 120 C2H2 Transcription Factor Family AT4G05330 51.000 1.96e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211455g00027 K12486 - gmx:100802691 302.753