Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211455g00023 ATGTGGCTGGCAATTGTGTGCATGTTATTGGCCAACAATTGTTCTAAGATGGCCGATGCACATGAGACTGACAAGAACATTGAGGTTTGGAAGATCAAGAAATTGATCAAAGCTCTCGAGGCTGCCAGAGGAAATGGGACAAGTATGATTTCCCTTATCATGCCCCCACGTGATCAAATTTCTCGAGTTACCAAGATGCTTGGTGATGAATTTGGTACTGCTTCCAACATCAAGAGCAGGGTGAACAGGCAGTCTGTGCTTGGGGCTATCACCTCTGCCCAGCAGAGGCTCAAGCTCTATAACAAGGTTCCTCCAAACGGGCTTGTGCTGTATACTGGCACGATTGTGACTGAAGATGGGAAGGAAAAGAAGGTTACTATTGATTTTGAGCCTTTCAGACCTATCAATGCTTCTCTCTATCTATGCGACAACAAGTTTCATACCGAGGCTCTAAATGAGCTTTTGGAGTCTGATGACAAGTTTGGGTTCATTGTCATGGACGGCAATGGTACCCTGTTTGGGACCTTGAGTGGTAACACGAGAGAAGTTCTTCATAAATTCAGTGTCGATCTCCCGAAGAAGCATGGAAGAGGAGGGCAATCAGCACTTCGATTTGCCCGTCTTCGCATGGAAAAACGTCATAACTATGTTAGGAAGACTGCCGAGCTTGCAACTCAGTTTTATATCAATCCAGCTACCAGCCAGCCAAATGTTTCTGGATTAATACTTGCTGGTTCAGCTGATTTCAAAACTGAGCTCAGTCAGTCTGATATGTTTGATCCTCGTCTTCAAGCAAAAATTCTCAATGTTGTAGATGTTTCCTATGGTGGTGAGAATGGGTTTAATCAAGCTATCGAACTTTCATCTGAGATTCTTTCCAATGTGAAATTTATCCAGGAGAAACGCTTGATTGGCAAATACTTTGAGGAAATTAGCCAGGATACTGGGAAATATGTTTTTGGGGTTGAGGATACTTTGAAAGCTTTGGAGATGGGAGCTGTTGAGACACTAATTGTGTGGGAAAATTTGGATATGAGCAGGTTTGTCTTGAAAAACGGTGCTACTGGTGAGGTTGTCATTCAACACTTCAACAAGGAACAAGAGGCCAATCAGAGCAACTTCCGGGATCCGGTATCCAATGCTGACTATGAGGTGCAGGAAAAAATGTCTCTTTTGGAGTGGTTTGCAAATGAATACAGGCGGTTTGGTTGCACTCTTGAGTTTGTCACAAACAAGTCACAAGAAGGTTCACAGTTCTGTAGAGGTTTTGGTGGGATTGGTGGGATATTGCGCTACCAGCTGGACATGAGAACATTTGATGATTTCTCTGATGATGATGGTGTCTATGAATCTGAATAG 1359 0.4341 MWLAIVCMLLANNCSKMADAHETDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVEDTLKALEMGAVETLIVWENLDMSRFVLKNGATGEVVIQHFNKEQEANQSNFRDPVSNADYEVQEKMSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRTFDDFSDDDGVYESE 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211455g00023 452 Gene3D - 295 452 IPR029064 -
Stsc211455g00023 452 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 19 445 IPR004403 GO:0003747|GO:0006415
Stsc211455g00023 452 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 22 156 IPR024049 -
Stsc211455g00023 452 Pfam eRF1 domain 1 34 154 IPR005140 -
Stsc211455g00023 452 SUPERFAMILY L30e-like 294 436 IPR029064 -
Stsc211455g00023 452 SMART eRF1_1_2 20 156 IPR005140 -
Stsc211455g00023 452 Pfam eRF1 domain 3 297 434 IPR005142 -
Stsc211455g00023 452 Gene3D eRF1 domain 1 13 151 IPR024049 -
Stsc211455g00023 452 FunFam Eukaryotic peptide chain release factor subunit 1 18 151 - -
Stsc211455g00023 452 SUPERFAMILY Translational machinery components 158 292 - -
Stsc211455g00023 452 FunFam Peptide chain release factor subunit 1 295 452 - -
Stsc211455g00023 452 FunFam Eukaryotic peptide chain release factor subunit 1 152 293 - -
Stsc211455g00023 452 Pfam eRF1 domain 2 160 293 IPR005141 -
Stsc211455g00023 452 NCBIfam peptide chain release factor aRF-1 29 433 IPR004403 GO:0003747|GO:0006415
Stsc211455g00023 452 Gene3D eRF1 domain 2 152 293 IPR042226 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211455g00023 Stsc-Chr211455 166141 167590 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211455g00023 17 450 Eukaryotic Initiation Factors Gene Family AT3G26618 89.631 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211455g00023 K03265 - gmx:100785916 812.372