Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211455g00016 ATGCTGCTTTCTTCAGGTAATCTGGTTTTGGTTATGCAGCAACTTTTTGCGGGGATAGCAAATGTCATTTTCCAGCTGGTAACTCCAACATCTGAAAGCTTTCATCTTCTTTGGCAGCTGAAGCTGATGCTCCAAGAAAAGCGAAAACATAGCGAACTATTTGAACATGAACAGACTGTGAAAGAACTTACCAGAGGGTGCTTCATATGGTTACCGAGGGAGGTCAATAGTGTAGCCGATGAAGCAAAGCTCGTTGCTGCTACTCCTTCGCTTCGGGCTTCAATTTGTGTGTTTGTTAGGGTTCCAGGTGAGGGATCTGGGAAGTGTTCGGCTTGCCACCACCACACACCGAGGCTCCTAAGCTACATCGTCACGTCGCCGTCCCTGCGTCCGTCGTCCCTGCGAAGTCGCCGTCGCCGTCTTGAAGCTCGTAGCCATCCCATCGCCGTCCCTGCGTCCGTCGTCATCTGCCGTTTTGACTGGTGCCTTCCTTTTCGCCCCTTGCCAACAATCGTCCGTTCACATCAGCCGTTCTCTCTGGTTCTTGTTGAGGCTCGTCGCTCACCACCAGTCACTGGCAACGTCTCTGTGTCTCTGCCTTCACTTCGGTTCTCACTCACTCACTCTCAACGAAGCTTGCTCATTTCATTCATTGGCATCACCACTACTGAAACAATCAAGAAAACAAACCCAAAGGCAGAATTTAAGGAGATCTCAAACATGTTGGGGGCTAAATGGAAGACAGTTAGTGCGAAAGAGAAGAAGCCGTACAAAGACAAGTAA 783 0.4955 MLLSSGNLVLVMQQLFAGIANVIFQLVTPTSESFHLLWQLKLMLQEKRKHSELFEHEQTVKELTRGCFIWLPREVNSVADEAKLVAATPSLRASICVFVRVPGEGSGKCSACHHHTPRLLSYIVTSPSLRPSSLRSRRRRLEARSHPIAVPASVVICRFDWCLPFRPLPTIVRSHQPFSLVLVEARRSPPVTGNVSVSLPSLRFSLTHSQRSLLISFIGITTTETIKKTNPKAEFKEISNMLGAKWKTVSAKEKKPYKDK 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211455g00016 260 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 224 260 IPR009071 -
Stsc211455g00016 260 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 224 260 IPR044601 GO:0003677
Stsc211455g00016 260 SUPERFAMILY HMG-box 224 260 IPR036910 -
Stsc211455g00016 260 Gene3D High mobility group box domain 221 260 IPR036910 -
Stsc211455g00016 260 Pfam HMG (high mobility group) box 224 260 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211455g00016 Stsc-Chr211455 113407 116335 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc211455g00016 HMG_box 2e-08 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211455g00016 K09273 - cave:132175196 63.5438