Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc211455g00012 | ATGGCAGCAGCACAACAAGAATCAGGATCAGAATCAGCCATTGCGTTTCAAGGCGTTGACGACTTCTACTTCTCAGCTATGATTGACGACGATCAAGATAACCTCATTCCCATTTCCGATGACAAGTACGCTCATGAATTGCAGTTCCAAGAGACCCTCATGTCCTCCCTTATCGCTTCTCAAGCCGCCACCAAAGGTTCTTCTTCATCATCATCAAAAACCGTTCGTTGCTTTCCATCGTCATCAACACCTTCCTCATCACGACCCGTGTTTGTCGTCCCCAAAACCGAGGAAATAGTGCTGCTGGATGACGACGAAGACGAAGAAGAAATGCTAATCATATGCGAGATTTGTGCGGAAACCAAGGAGACTTCTCAGATGTTCAGTAACAAGAACTGTGATCATTCCTTCTGCTCTGATTGTGTCACAAAGTATGTGGCCACAAAGATCCAAGAGAGCATAACACTTGTTCCCTGCCCTGGTTTGAACTGCAAGGGATTCTTGGAGCTTGATTCCTGCAGGCCCATGCTCCCAAAAGAGCTTCTTGATAGGTGGGACGATGCGCTCTGTGAGTCCCTCTTTCTTGCTGTTCCCAAATTCTATTGCCCCTTTAGGGACTGTTCTGCAATGCTGCTTGATGAGAATGATGGTGGTGAAGGGATTATTAGGGAGGCTGAGTGCCCCTTTTGCCATAGGCTGTTCTGTGCCAGGTGTCATGTTCCATGGCACCCTGGGATTGAGTGTACGGTGTTCCAGTCACTCAATGAGGATGAGAGAGGCAGGGAGGATCTTCTTCTTAGGGACCTTGCTGGTCAAAAGAAATGGCATAGGTGTCCAAGATGCAAGTTCTATGTCGAGAAGAATGGAGGCTGTTTGCATATTGTCTGCAGGTGCCGGTTCGAGTTCTGCTATGCTTGCGGTGAACTGTGGCATGCCAATCATGGTGGTTGCCTAAGGAATTAG | 963 | 0.4798 | MAAAQQESGSESAIAFQGVDDFYFSAMIDDDQDNLIPISDDKYAHELQFQETLMSSLIASQAATKGSSSSSSKTVRCFPSSSTPSSSRPVFVVPKTEEIVLLDDDEDEEEMLIICEICAETKETSQMFSNKNCDHSFCSDCVTKYVATKIQESITLVPCPGLNCKGFLELDSCRPMLPKELLDRWDDALCESLFLAVPKFYCPFRDCSAMLLDENDGGEGIIREAECPFCHRLFCARCHVPWHPGIECTVFQSLNEDERGREDLLLRDLAGQKKWHRCPRCKFYVEKNGGCLHIVCRCRFEFCYACGELWHANHGGCLRN | 320 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc211455g00012 | 320 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 64 | 310 | IPR031127 | GO:0004842|GO:0016567 | |
Stsc211455g00012 | 320 | CDD | BRcat_RBR_unk | 198 | 249 | - | - | |
Stsc211455g00012 | 320 | CDD | Rcat_RBR_unk | 274 | 310 | - | - | |
Stsc211455g00012 | 320 | Pfam | Zinc finger, C3HC4 type (RING finger) | 115 | 160 | IPR018957 | GO:0046872 | |
Stsc211455g00012 | 320 | SUPERFAMILY | RING/U-box | 189 | 252 | - | - | |
Stsc211455g00012 | 320 | MobiDBLite | consensus disorder prediction | 66 | 85 | - | - | |
Stsc211455g00012 | 320 | Pfam | IBR domain, a half RING-finger domain | 200 | 248 | IPR002867 | GO:0008270 | |
Stsc211455g00012 | 320 | Pfam | IBR domain, a half RING-finger domain | 269 | 317 | IPR002867 | GO:0008270 | |
Stsc211455g00012 | 320 | ProSitePatterns | Zinc finger RING-type signature. | 133 | 142 | IPR017907 | - | |
Stsc211455g00012 | 320 | SMART | ibrneu5 | 258 | 317 | IPR002867 | GO:0008270 | |
Stsc211455g00012 | 320 | SMART | ibrneu5 | 183 | 248 | IPR002867 | GO:0008270 | |
Stsc211455g00012 | 320 | SUPERFAMILY | RING/U-box | 112 | 192 | - | - | |
Stsc211455g00012 | 320 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 193 | IPR013083 | - | |
Stsc211455g00012 | 320 | FunFam | RBR-type E3 ubiquitin transferase | 250 | 320 | - | - | |
Stsc211455g00012 | 320 | SUPERFAMILY | RING/U-box | 259 | 316 | - | - | |
Stsc211455g00012 | 320 | ProSiteProfiles | Zinc finger RING-type profile. | 115 | 160 | IPR001841 | - | |
Stsc211455g00012 | 320 | ProSiteProfiles | TRIAD supradomain profile. | 111 | 320 | IPR044066 | - | |
Stsc211455g00012 | 320 | FunFam | RBR-type E3 ubiquitin transferase | 110 | 196 | - | - | |
Stsc211455g00012 | 320 | Gene3D | - | 246 | 320 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc211455g00012 | Stsc-Chr211455 | 65333 | 66867 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc211455g00012 | 115 | 307 | C3H Transcription Factor Family | AT2G19610 | 26.699 | 8.84e-17 | 78.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc211455g00012 | K11975 | - | qsa:O6P43_027978 | 370.548 |