Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211455g00012 ATGGCAGCAGCACAACAAGAATCAGGATCAGAATCAGCCATTGCGTTTCAAGGCGTTGACGACTTCTACTTCTCAGCTATGATTGACGACGATCAAGATAACCTCATTCCCATTTCCGATGACAAGTACGCTCATGAATTGCAGTTCCAAGAGACCCTCATGTCCTCCCTTATCGCTTCTCAAGCCGCCACCAAAGGTTCTTCTTCATCATCATCAAAAACCGTTCGTTGCTTTCCATCGTCATCAACACCTTCCTCATCACGACCCGTGTTTGTCGTCCCCAAAACCGAGGAAATAGTGCTGCTGGATGACGACGAAGACGAAGAAGAAATGCTAATCATATGCGAGATTTGTGCGGAAACCAAGGAGACTTCTCAGATGTTCAGTAACAAGAACTGTGATCATTCCTTCTGCTCTGATTGTGTCACAAAGTATGTGGCCACAAAGATCCAAGAGAGCATAACACTTGTTCCCTGCCCTGGTTTGAACTGCAAGGGATTCTTGGAGCTTGATTCCTGCAGGCCCATGCTCCCAAAAGAGCTTCTTGATAGGTGGGACGATGCGCTCTGTGAGTCCCTCTTTCTTGCTGTTCCCAAATTCTATTGCCCCTTTAGGGACTGTTCTGCAATGCTGCTTGATGAGAATGATGGTGGTGAAGGGATTATTAGGGAGGCTGAGTGCCCCTTTTGCCATAGGCTGTTCTGTGCCAGGTGTCATGTTCCATGGCACCCTGGGATTGAGTGTACGGTGTTCCAGTCACTCAATGAGGATGAGAGAGGCAGGGAGGATCTTCTTCTTAGGGACCTTGCTGGTCAAAAGAAATGGCATAGGTGTCCAAGATGCAAGTTCTATGTCGAGAAGAATGGAGGCTGTTTGCATATTGTCTGCAGGTGCCGGTTCGAGTTCTGCTATGCTTGCGGTGAACTGTGGCATGCCAATCATGGTGGTTGCCTAAGGAATTAG 963 0.4798 MAAAQQESGSESAIAFQGVDDFYFSAMIDDDQDNLIPISDDKYAHELQFQETLMSSLIASQAATKGSSSSSSKTVRCFPSSSTPSSSRPVFVVPKTEEIVLLDDDEDEEEMLIICEICAETKETSQMFSNKNCDHSFCSDCVTKYVATKIQESITLVPCPGLNCKGFLELDSCRPMLPKELLDRWDDALCESLFLAVPKFYCPFRDCSAMLLDENDGGEGIIREAECPFCHRLFCARCHVPWHPGIECTVFQSLNEDERGREDLLLRDLAGQKKWHRCPRCKFYVEKNGGCLHIVCRCRFEFCYACGELWHANHGGCLRN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211455g00012 320 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 64 310 IPR031127 GO:0004842|GO:0016567
Stsc211455g00012 320 CDD BRcat_RBR_unk 198 249 - -
Stsc211455g00012 320 CDD Rcat_RBR_unk 274 310 - -
Stsc211455g00012 320 Pfam Zinc finger, C3HC4 type (RING finger) 115 160 IPR018957 GO:0046872
Stsc211455g00012 320 SUPERFAMILY RING/U-box 189 252 - -
Stsc211455g00012 320 MobiDBLite consensus disorder prediction 66 85 - -
Stsc211455g00012 320 Pfam IBR domain, a half RING-finger domain 200 248 IPR002867 GO:0008270
Stsc211455g00012 320 Pfam IBR domain, a half RING-finger domain 269 317 IPR002867 GO:0008270
Stsc211455g00012 320 ProSitePatterns Zinc finger RING-type signature. 133 142 IPR017907 -
Stsc211455g00012 320 SMART ibrneu5 258 317 IPR002867 GO:0008270
Stsc211455g00012 320 SMART ibrneu5 183 248 IPR002867 GO:0008270
Stsc211455g00012 320 SUPERFAMILY RING/U-box 112 192 - -
Stsc211455g00012 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 193 IPR013083 -
Stsc211455g00012 320 FunFam RBR-type E3 ubiquitin transferase 250 320 - -
Stsc211455g00012 320 SUPERFAMILY RING/U-box 259 316 - -
Stsc211455g00012 320 ProSiteProfiles Zinc finger RING-type profile. 115 160 IPR001841 -
Stsc211455g00012 320 ProSiteProfiles TRIAD supradomain profile. 111 320 IPR044066 -
Stsc211455g00012 320 FunFam RBR-type E3 ubiquitin transferase 110 196 - -
Stsc211455g00012 320 Gene3D - 246 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211455g00012 Stsc-Chr211455 65333 66867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211455g00012 115 307 C3H Transcription Factor Family AT2G19610 26.699 8.84e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211455g00012 K11975 - qsa:O6P43_027978 370.548