Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211454g00054 ATGGATATATTTGAGGCATTCCCACAAGTTAGCATGTGGGGTGACAACTTTAAGGTTGATGGTGGCCTCATAAATTCAATTACTTCTCCAATGTTGTTGGTGAGCACTAGCACCATGGCCATGGACAACAAGCCTGAATATGTACCTCATGAATTGAGGGAACAATCTAGACAAAATCAAGAGGCTACCAATAAAGATGTTAGTAAGGTACTAAGACGGCTAGCGCAGAATCGCGAGGCTGCTCGGAAGAGCCGGATGCGAAAAAAGGCTTATGTTCAACAATTAGAAACAAGCCGTTTGAAGCTCATGCAATTGGAGGAGGAGATTGTTAAAGCCAGAAAGCAGAGTATGTATATTGGCAATAATCCATTGGATGCTAGTTATATTGGATCATCTGGATCATTAAACTCAGGGATTGTTTTGTTTGAAATTGAATATGGGAATTGGATTGAAGAGCAAAACAAGCTGAATGAAGAACTCAGAAATGCATTTCAAACTCAAGCACCTGATGAACAACAACTCAACCTACTTGTTCAGACTGTCTTGAACCATTACTCAAATCTTTTCAAGATGAAAGCAGATGCTGCAAAGGCAGACATATTCTACCTAATCAGTGGTGTCTGGAAATCATCCGCGGAGCGCCTTTTCCTTTGGATCGGAGGATCTCGCCCTTCCCAGCTTCTAAGTATCATTCTGCCCCAGCTTGAGCCATTGACTGAACAACAAACTGCTAGCATTAGCAGACTCCGGCTATCGTCGCAGCAAGCCGAAGATGCACTCTCACAAGGACTGGATAGACTCCAGCAGAGTCTTGTCCACAACATAGCAGTTGATCCATTGGCAGCAGGAAACTTGGGGTTTCAGATGGCTGATTCCATTGAGAAAATTGAAGAACTTGAAGGCTTTCTTAACCAGGCAGATCATCTTAGGCAACAGACACTGATACACATGTCAAGGATCCTTACAACACATCAAGCTGCTCAAGGATTGCTGGCTTTGTGGCAATACTTTCAGAGACTTAAATCTCTGAGTTCTCTTTGGGCTTCTCGTCCATCTCAGTTACCTCTCTAG 1071 0.4323 MDIFEAFPQVSMWGDNFKVDGGLINSITSPMLLVSTSTMAMDNKPEYVPHELREQSRQNQEATNKDVSKVLRRLAQNREAARKSRMRKKAYVQQLETSRLKLMQLEEEIVKARKQSMYIGNNPLDASYIGSSGSLNSGIVLFEIEYGNWIEEQNKLNEELRNAFQTQAPDEQQLNLLVQTVLNHYSNLFKMKADAAKADIFYLISGVWKSSAERLFLWIGGSRPSQLLSIILPQLEPLTEQQTASISRLRLSSQQAEDALSQGLDRLQQSLVHNIAVDPLAAGNLGFQMADSIEKIEELEGFLNQADHLRQQTLIHMSRILTTHQAAQGLLALWQYFQRLKSLSSLWASRPSQLPL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211454g00054 356 Pfam bZIP transcription factor 69 101 IPR004827 GO:0003700|GO:0006355
Stsc211454g00054 356 SUPERFAMILY Leucine zipper domain 69 107 IPR046347 GO:0003700|GO:0006355
Stsc211454g00054 356 Coils Coil 88 115 - -
Stsc211454g00054 356 SMART brlzneu 65 125 IPR004827 GO:0003700|GO:0006355
Stsc211454g00054 356 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 72 87 IPR004827 GO:0003700|GO:0006355
Stsc211454g00054 356 Pfam Seed dormancy control 158 232 IPR025422 GO:0006351|GO:0043565
Stsc211454g00054 356 FunFam BZIP family transcription factor 68 117 - -
Stsc211454g00054 356 PANTHER TRANSCRIPTION FACTOR TGA9 2 352 - -
Stsc211454g00054 356 Gene3D - 68 119 - -
Stsc211454g00054 356 ProSiteProfiles DOG1 domain profile. 139 350 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211454g00054 Stsc-Chr211454 359242 361799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211454g00054 1 353 Calmodulin-binding Proteins AT1G22070 52.044 3.33e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc211454g00054 DOG1 2.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211454g00054 K14431 - gmx:100794268 486.493