Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211454g00044 ATGTCCCGCGGTGCTCCCTCCACCTCAGCATCGCCGCCGAGGCCAACCGCTATTCCACCCAAATTCTGGCGCGCATGTGCTGGAATCTCGGCGCAGGAGCCACCAGTGGTGAACTCTAGGGTTTACTACTTTCCACAAGGACACATCGACCAAGCTGCATCCAAACCACTAAACCTTTCACCTCTAGTTCACTCCACGCCGTTCATCCTTTGCCGTGTCTCCGCCGTCAACTTCTTGGCCGATCCTAACACCGACGAGGTCTTTCTCAAGATTCTTCTCCATCCTGTCACTGGATCAACTCAAGATTTTCTTCCTATTGCCGACGCCGCCGAAGACAGCGGTGGAAACGGCAACGGCGACGATGAAAAGGTTGAGTCGTACGGCAAGGTTCTCACGCAGTCCGACAACAGAGGAGGGTTATTTGTGCCGAAGTCCTGCGCGGATTTGATTTTCCCGCCTCACGAAATGCCGCCGCATAAGTTTATCATGACCGACCTCCACGGCACCGCTTGGGAGTTCCGCCATACCTGCACAGTGAACACGAAGCGGCACCTCTTGACTGCTGGCTGGAAGAAATTCGCCGACAGCAAGATGCTTATCGACTACGATACTCTGATCTTCATGAAGGACTCCGATGGGAAGGTGTTCGTCGGGCTCCGCCGTAATATGTCACCGGACGAGAGGAAAAAGAAAAAAAGAAGAGGTGGTGATGTCGAAGGGGTTTGCAAGGAATGGGAAGGGGAGGGTGAGTTCGGCGTCGGTGGAGGAGGCGATGGAGCTGGCGGCTCAGAAGAAGCCGCTGAGGATGTGGAGGCGAAAGTGATTGGTATTCTTTGGCGTGTTGGGATGAAAGTAATAGTGAAGATGAGAGCGACCTTCGAGTCTTCTCAGGTGATTTGGTTTCAGGGAACTGTTTCTGGTGCTTCTATTCCCGCTGCTGATCAACCGTGGAGCGGTTCTCCTTGGCACATGCTTCAGATCACACGGGTTGATCCTCTTGATGAAATGTTGAAGAATGAAAATTATTCCGTCAGTCCATGGCAGGTGATGGAGCTTCTTTCTGACGCACCTGCACTAGGTCCCCCTACAAAGAAGTTTGGAACTACTGATGGAGAGGAAGAAGCATTCCCTATTCCAGATTCAGCAAAGGGATTGTCGAAAGAAGCATTACTGAGTTATTATGCTAAAACTTCTCATGCTGGCATGCAGGACGGAGCCAGCCATGATTTCCCTGCTACTCCACCAACCTGGTTCACTCATAAACGTTCATTTTGGCTATTTGGTTCTACTATTCAGTTAGAACAACCTGCTGAAAGTGGCGCAAGAGATGACCATAGTAGAGCCATTGATGACAAGTGA 1359 0.5129 MSRGAPSTSASPPRPTAIPPKFWRACAGISAQEPPVVNSRVYYFPQGHIDQAASKPLNLSPLVHSTPFILCRVSAVNFLADPNTDEVFLKILLHPVTGSTQDFLPIADAAEDSGGNGNGDDEKVESYGKVLTQSDNRGGLFVPKSCADLIFPPHEMPPHKFIMTDLHGTAWEFRHTCTVNTKRHLLTAGWKKFADSKMLIDYDTLIFMKDSDGKVFVGLRRNMSPDERKKKKRRGGDVEGVCKEWEGEGEFGVGGGGDGAGGSEEAAEDVEAKVIGILWRVGMKVIVKMRATFESSQVIWFQGTVSGASIPAADQPWSGSPWHMLQITRVDPLDEMLKNENYSVSPWQVMELLSDAPALGPPTKKFGTTDGEEEAFPIPDSAKGLSKEALLSYYAKTSHAGMQDGASHDFPATPPTWFTHKRSFWLFGSTIQLEQPAESGARDDHSRAIDDK 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211454g00044 452 Gene3D - 279 356 - -
Stsc211454g00044 452 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 272 371 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc211454g00044 452 SMART B3_2 127 223 IPR003340 GO:0003677
Stsc211454g00044 452 Pfam B3 DNA binding domain 129 222 IPR003340 GO:0003677
Stsc211454g00044 452 SUPERFAMILY DNA-binding pseudobarrel domain 124 221 IPR015300 -
Stsc211454g00044 452 CDD B3_DNA 126 217 IPR003340 GO:0003677
Stsc211454g00044 452 Gene3D - 124 223 IPR015300 -
Stsc211454g00044 452 ProSiteProfiles B3 DNA-binding domain profile. 125 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211454g00044 Stsc-Chr211454 293659 295548 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211454g00044 11 418 B3 DNA Binding Superfamily AT1G77850 36.920 2.08e-64 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc211454g00044 B3 1.3e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211454g00044 - - aip:107607847 427.172