Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211454g00043 ATGTCCCGCCGTGCTCAATCGGCCTCAGCATCGCCGTCGAAGCCAACCCCTATTCCCGCCAAATTCTGGCGCCCATGTGCTGGAATCTCGGCTCAGGATCCACCAGTGGTGAACTCTAGGGTTTACTACTTTCCACAAGGACACATCGACCAAGCTGCCTCCAAACCACGAAACCTTTCACCTCTCGTTTACTCCAAGCCGGTCATCCCTTGCCGTGTCTCCGCCGTCAACTTCTTCGCCGACCCTAACACCGACGAGGTCTTTCTCAAGATTCTTCTCCATCCTGTCGCTGTTGGATCTTCTACCGCTCAAGATTTTCCTCCGCCCGCCGAAGGAGGCGGCGGCAACGGCAGTGGCAATGGCGACGATGAAAAGGTTGAGTCGTACGCCAAGATTCTCACGCGGTCCGATGCAAACAATGGCGGAGGATTTTCGGTGCCGAGGGCCTGTGCGGACTTGATCTTCCCGCCGCTGAACTTTGAAGACGATCTGCCGGTGCAGACGCTTCGCATAACCGACCTCCACGGCGCCGTTTGGGAGTTCCGCCACGTCTACCGCGGGAAGCCGAAGCGGCACCTCTTCACTTCAGGCTGGAGCAAGTTCGTCGACAGCAAGATGCTTATCTCCGGGGATTCTTTGATCTTCATGAAGGATTCCGATGGGAGGATGTTCGTCGGGCTCCGCCGAAACATGTCGCCGGACGATGGCCTCACTGACGCCGATTTAGACTGGTTAGACGCGATTTTAGGGACGGACGAGGGGGAAAAGGAAGAAGAAGAAGAGTTGCCGAAGGAGGGGTTTGCGAGGAACGGGAAGGGGAGGGTGAGTTCGGCGTCGGTGGCGGAGGCGATGGAGCTTGCGGCGCAGAACAAGGCGTTCGAAGTTGTTTACTATCCGAACGTCGGGTGGGGGGAGTTCGTGGTGAAGGCGGAGGATGTGGAGGTGAACGTGAATGGTATTGTTTGGCGTGTTGGGATGATAGTGAAGATGGCCAGAGAGAACTTGGATTCTTCACGGATGATTTGGTTCCAAGGAATTGTTTGTGGTGTTTCTGTTCCCGCTCATGATCAACCGTGGAGCGGTTCTCCTTGGCGCATGCTTCAGGTCAAATGGAATGATTCTGAAATGTTGATGAAGATTGCAAATTTCGTCAGTCCATGGCAGGTGGAGCTTCTTTCTGACGCACCTTCAGTTCCTGCTGCACTAGTTCCCCCTACAAAGAAGTTTAGAACTACTGATGGAGAGGAAGAACCCTTCTTTTCTAGGCTAACATTCCCTATTCCAGATTCAGCAAAGGGATTGTTGAAAGAAGCATTACTGAGTTATTATGCTAAAACTTCTCCTGCTGGCATGCAGGAGGGAGCCAACCATGATGTCTCTGCTACTCCAACTTGTCCAATTTTTCCAAGCAACAACTCTCCAATGTCTATGGGTAATTCCTGTGGGAATAGCATAGTAGTACCAAGGTTGAATACTATGTTGATGACAGAGCCAAACGTTGGCACTTGTAAACGTTCATTTCAACTATTTGGCTGTACTATTCAATCAGAACAACCTACTGATGAAAGAGATGGCAATAGTAGTTCATTTCAGCTATTTGGCCGTACTATTCGGTTAGAACCTGCTGATGAAAGTGGTGCAAAAGATGACAACAAGTGA 1659 0.5142 MSRRAQSASASPSKPTPIPAKFWRPCAGISAQDPPVVNSRVYYFPQGHIDQAASKPRNLSPLVYSKPVIPCRVSAVNFFADPNTDEVFLKILLHPVAVGSSTAQDFPPPAEGGGGNGSGNGDDEKVESYAKILTRSDANNGGGFSVPRACADLIFPPLNFEDDLPVQTLRITDLHGAVWEFRHVYRGKPKRHLFTSGWSKFVDSKMLISGDSLIFMKDSDGRMFVGLRRNMSPDDGLTDADLDWLDAILGTDEGEKEEEEELPKEGFARNGKGRVSSASVAEAMELAAQNKAFEVVYYPNVGWGEFVVKAEDVEVNVNGIVWRVGMIVKMARENLDSSRMIWFQGIVCGVSVPAHDQPWSGSPWRMLQVKWNDSEMLMKIANFVSPWQVELLSDAPSVPAALVPPTKKFRTTDGEEEPFFSRLTFPIPDSAKGLLKEALLSYYAKTSPAGMQEGANHDVSATPTCPIFPSNNSPMSMGNSCGNSIVVPRLNTMLMTEPNVGTCKRSFQLFGCTIQSEQPTDERDGNSSSFQLFGRTIRLEPADESGAKDDNK 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211454g00043 552 SMART B3_2 129 231 IPR003340 GO:0003677
Stsc211454g00043 552 MobiDBLite consensus disorder prediction 517 534 - -
Stsc211454g00043 552 MobiDBLite consensus disorder prediction 102 124 - -
Stsc211454g00043 552 SUPERFAMILY DNA-binding pseudobarrel domain 125 229 IPR015300 -
Stsc211454g00043 552 MobiDBLite consensus disorder prediction 517 552 - -
Stsc211454g00043 552 Gene3D - 126 231 IPR015300 -
Stsc211454g00043 552 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 522 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc211454g00043 552 CDD B3_DNA 128 229 IPR003340 GO:0003677
Stsc211454g00043 552 Gene3D - 322 397 - -
Stsc211454g00043 552 Pfam Auxin response factor 283 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc211454g00043 552 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Stsc211454g00043 552 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Stsc211454g00043 552 FunFam Auxin response factor 127 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211454g00043 Stsc-Chr211454 280995 283160 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211454g00043 22 546 B3 DNA Binding Superfamily AT1G77850 40.429 1.48e-114 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc211454g00043 B3 4.8e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211454g00043 - - ahf:112730398 691.419