Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211454g00041 ATGCCCCGCGGTGCTCCCTCCACGTCAGCATCGCCGCCGAGGCCAACCTCTATTCCACCCAAATTCTGGCGCGCATGTGCTGGAATCTCGGCGCAGGAGCCACCAGTGGTGAACTCTAGGGTTTACTACTTTCCACAAGGACACATCGACCAAGCTGCGTCGAAACCACGAAACCTTTCACATCTCCTTTACTCTAAGCCGGTCATCCCTTGCCGTGTCTCCGCCGTCAATTTCTTCGCCGATCCTAACACCGACGAGGTCTTTCTCAAGATTCTTCTCCATCCTATCACTGGATCAACTCAAGATTTTCTTCCTATTGCCGACGCCGCCGAAGAAAGCGGTGGCAACGGCAACAGCGACGATGAAAAGGTTGAGTCGTACGCCAAGGTTCTCACGCGATCCGACGTCAGCTGCAAAGGAGGGTTTTCAGTACCGAAGACCTGCGCGGAAATGATCTTTGAAGGCGAAATGCCGCAGCAGACGTTTAGCATGACCGACCTCCATGGCAACGCTTGGGAGTTCCGCCGTATCTACTCAGGGTACCCGAAGCGGCACCTCTTCAGTAGTGGCTGGAAGGAGTTCGTCAACAGCAAGATGCTTATCTCCGGCGATACTCTGATCTTCATGAAGGACTCCGATGGGAAGGTGTTCGTCGGGATCCGCCGTAATATGTCGCCGGACGAGGATGAAAAGCAAAAAGAAGAGGTGGTGATGTCGGAGTCTCGGAGGGGAAGGGGAGGGTGA 744 0.547 MPRGAPSTSASPPRPTSIPPKFWRACAGISAQEPPVVNSRVYYFPQGHIDQAASKPRNLSHLLYSKPVIPCRVSAVNFFADPNTDEVFLKILLHPITGSTQDFLPIADAAEESGGNGNSDDEKVESYAKVLTRSDVSCKGGFSVPKTCAEMIFEGEMPQQTFSMTDLHGNAWEFRRIYSGYPKRHLFSSGWKEFVNSKMLISGDTLIFMKDSDGKVFVGIRRNMSPDEDEKQKEEVVMSESRRGRGG 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211454g00041 247 Gene3D - 124 224 IPR015300 -
Stsc211454g00041 247 ProSiteProfiles B3 DNA-binding domain profile. 127 224 IPR003340 GO:0003677
Stsc211454g00041 247 SUPERFAMILY DNA-binding pseudobarrel domain 123 222 IPR015300 -
Stsc211454g00041 247 MobiDBLite consensus disorder prediction 223 247 - -
Stsc211454g00041 247 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 240 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc211454g00041 247 Pfam B3 DNA binding domain 128 223 IPR003340 GO:0003677
Stsc211454g00041 247 SMART B3_2 127 224 IPR003340 GO:0003677
Stsc211454g00041 247 CDD B3_DNA 126 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211454g00041 Stsc-Chr211454 276060 276803 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211454g00041 6 222 B3 DNA Binding Superfamily AT1G77850 43.243 4.28e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211454g00041 B3 1.3e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211454g00041 - - aip:107607847 336.65