Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211454g00040 ATGCCTCGCCGTAGTGCTCCCTCCACCTCATCGCCGCCGAGGCCAACCGCTATTCCACCCAAATTCTGGCGCGCATGTGCTGGAATCTCGGCGCAGGAGCCACCAGTGGTGAACTCTAGGGTTTACTACTTTCCACAAGGACACATCGACCAAGCTGCCTCCAAACCGCGAAACCTTTCACCTCTCGTTTACTCCAAGCCGGTCATCCCTTGCCGTGTCTCCGCCGTCAACTTCTTCGCCGATCCTAACACCGACGAGGTGTTTCTCAAGATTCTTCTCCATCCTGTCGCTGTTGGATCTTCTACCGCTCAAGATTTTCTTCCTATTGCCGGCCCCGCCGAAGGCAGCGGCGGCAACTGCAATGGCAATGGCGACGATGAAAAGGTTGAGTCGTACGCCAAGATTCTCACGCGGTCCGATGCAAACAATGGCGGAGGGTTTTCGGTGCCGAGGGCCTGTGCGGACTTGATCTTCCCGCCGCTGAACTTTGAAGACGATCCGCCGGTGCAGACGCTTCGCATAACCGACCTCCACGGCGCCGTTTGGGAGTTCCGCCACATCTACCGCGGGACGCCGAGGCGGCACCTCTTCACTTCAGGCTGGAGCAAGTTCGTCAACAGCAAGATGCTTATCTCCGGCGATTCTGTGATCTTCATGAAGGATTCCGATGGGAGGATGTTCGTCGGGCTCCGCCGAAACATGTCGCCGGACGATGGTATCTCTGACGGCGGGTCGGACTGGTTAGACGCGATTTTAGGGGCGGACGAGGGGGAAAATGAAAACGGAGAGGAAGAAGAAGAGTTGCCGACGGAGGGGTTTGCGAGGAACGGGAAGGGGAGGGTGAGTTCGGCGTCGGTGGCGGAGGCGATGGAGCTGGCGGCGCAGAACAAGCCGTTCGAAGTTGTTTACTATCCGAGCGTGGGGTGGGGGGAGTTCGTGGTGAGGGCGGAGGATGTGGAGGTGAAGATGAATGGTATTCTCTGGAGTGCTGGGATGAGAGTGAAGATGTCCAGAGAGAACTTGGATTCTTCACGGATGACTTGGTTTCAGGGAACTGTTTCTGGTGTTTCTGTTCCCGCTGATGATCAACCATGGAGCGGTTCTCCTTGGCGCATGCTTCAGATTACATGGGATGAACCTGAAGTCTTGAAGAATGCAAATTCGGTCAGTCCATGGCAGGTGGAGCTTCTTCCAGTCTCACCTTCACTTCCTCAAGTATTTCCCCCAACAAAGAAGTTCAGAACCGCAGATGGTTCTGGGGTTTACATTGATGAAGTGGGAGAACCCTCCTTTTCCATGACAAGACCTCCAACTATTCCTGGTTCAGCAATGGGACTGCTGAATCAAACATTGTTGAGTAATTATAGTACCCCTTTTCCTGCTGCTGGCATGCAGGGAGCCAGGCATAATTCTCTATTTTCTGCACCTACTTATCCCATCTTTCCGATTAATCCTCCTCTGTGTTTCGGTAATTCCTTTGGGAACAACATTAGACCAAGATTGAATACTATGTTGCAAGAATCCAACATTGACCCTCAAAAACCTGAATACTTATCACCAGATAGCAAGGCTACTTTTGTTGGGACCCCTAACAGCAACTCAACTAAATCTGGGCCTACTTCATTTCAGCTATTTGGTTGTACTATTCACACAGATAAACCTTCTGAAATTAGTGACCATAGAACAGATGAATGTGGCGGAGAAGAAGGCAACACAGAATTGAGGCATTAA 1731 0.5211 MPRRSAPSTSSPPRPTAIPPKFWRACAGISAQEPPVVNSRVYYFPQGHIDQAASKPRNLSPLVYSKPVIPCRVSAVNFFADPNTDEVFLKILLHPVAVGSSTAQDFLPIAGPAEGSGGNCNGNGDDEKVESYAKILTRSDANNGGGFSVPRACADLIFPPLNFEDDPPVQTLRITDLHGAVWEFRHIYRGTPRRHLFTSGWSKFVNSKMLISGDSVIFMKDSDGRMFVGLRRNMSPDDGISDGGSDWLDAILGADEGENENGEEEEELPTEGFARNGKGRVSSASVAEAMELAAQNKPFEVVYYPSVGWGEFVVRAEDVEVKMNGILWSAGMRVKMSRENLDSSRMTWFQGTVSGVSVPADDQPWSGSPWRMLQITWDEPEVLKNANSVSPWQVELLPVSPSLPQVFPPTKKFRTADGSGVYIDEVGEPSFSMTRPPTIPGSAMGLLNQTLLSNYSTPFPAAGMQGARHNSLFSAPTYPIFPINPPLCFGNSFGNNIRPRLNTMLQESNIDPQKPEYLSPDSKATFVGTPNSNSTKSGPTSFQLFGCTIHTDKPSEISDHRTDECGGEEGNTELRH 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211454g00040 576 Gene3D - 129 234 IPR015300 -
Stsc211454g00040 576 CDD B3_DNA 131 232 IPR003340 GO:0003677
Stsc211454g00040 576 MobiDBLite consensus disorder prediction 258 277 - -
Stsc211454g00040 576 MobiDBLite consensus disorder prediction 553 576 - -
Stsc211454g00040 576 Pfam Auxin response factor 289 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc211454g00040 576 SUPERFAMILY DNA-binding pseudobarrel domain 128 235 IPR015300 -
Stsc211454g00040 576 Gene3D - 328 402 - -
Stsc211454g00040 576 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 558 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc211454g00040 576 FunFam Auxin response factor 130 234 - -
Stsc211454g00040 576 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Stsc211454g00040 576 SMART B3_2 132 234 IPR003340 GO:0003677
Stsc211454g00040 576 Pfam B3 DNA binding domain 133 233 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211454g00040 Stsc-Chr211454 271547 274200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211454g00040 11 573 B3 DNA Binding Superfamily AT1G77850 44.194 5.08e-139 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc211454g00040 B3 2.4e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211454g00040 - - ahf:112730398 835.869