Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211454g00038 ATGGCAATGAGCACAAGATGGATCAACCAGGTGTTCTTGAGTTTCAGAGGTGATGACACCAGAAAAGGCTTCACAGACCACCTTTTTGCTTCCCTTGAAAGAAGGGGTATCAAGACTTTCAAGGATGATCATGACCTTCATAAGGGAGCATCCATATCTTTGGAGCTCTTCAAGGCCATTCAAGACTCCATGTTTGCACTCATCATCCTCTCACCAAACTATGCTTCCTCTACTTGGTGCTTAGATGAGCTCCAAAAGATTCTTCACTGCAGGAACAATCTTGGCCAACATGTTTTTCCCATCTTCTATGGTGTTGATCCCTCTGATGTGAGATATCAAAGAGGAACTTTTGGTGAAGCTTTCAGTAAACATGAAGAGAGATTCAGTCAAGACAAGGAGAAAGTGAAAAGATGGAGAGATTCCTTGAGAGAAGTTGCAAGTTTCTCTGGTTGGGACTCTCAAGATCAACATGAAGCAGGACTAGTTGAAACAATTGTTGATCACATACAGAAAATGCTGATTCCTAAGCTGCCAACTTGCACAGATAACCTTGTTGGGGTTGATTCAAGGATGAAGAGGGTGATTTCGCTCATAGGCATTCGGTTGGATGATGTTCGCTTTGTAGGCATATGGGGCATGGGCGGCGGAGGTAAGACTACAACTGCTAGATTAGTCTATGAATCAATCAAAGATGAATTCAAAGTTAGTTGCTTCCTTCAGAACATTAGAGAGATGCATGAGAAAAATAATGGCCTAGTTCAAATCCAAAAGGAACTTCTTTCTCACCTTAATGTAAGAATCAGCACTTTTCATAATGTATTTGATGGGAAAAAGATAATAGCGAATTCTTTTCGCAATAAGAAGGTTCTTCTTGTTCTTGATGATGTTAGTGAGTTAAGTCAATTAGAGAATTTAGCAGAGAAGCAAGAGTGGTTTGGTCCAGGTAGTAAAGTCATAATCACAACCAGAGATAAACACATTCTAGCATCACATGGAGTGCTTAAAACCTGTGAGATTGGAGGCTTATTCTCAGATGAAGCTCTTCATCTCCTCTCTTTGAAAGCCTTCAAGCAAGATCAACCTAAAGAAGGGTATTTGGATTTGTGCAAAGAAGTGGTTGAATACACTAAAGGCCTTCCATTAGCACTTGAAGTGCTAGGTTCCCATCTTCAGGGAAGAACTGTTGAAGTTTGGCACAGTGCTTTGAAGCAAATAAGAAGTTTTCCACTTCCTAAAATCCAAAACACACTGAAAATAAGTTATGATGGTTTGAATAGTCCAGAGAAAGATATGTTTCTAGATATTGCATGTTTCTTCAAGGGCATGGATAAAGAAGAAGTTACAGATATGTTAGAAATTTGCGGTGGTTGTCCTAAGATTGGAATTGAAATCTTGATTGAAAGAAATCTGATAACTGTTAGTGCAACCAATAAGTTGGAGATGCATGATTTGATTCAAGAAATGGGAAGAAACATTGTGTTTCTAGAATCTACGAACGATCCAGGCAAACGAAGCAGGTTATGGTCTCAAGATGACATTGATTATGTATTGACAAATAATAAGGGGACTGAAGCCATTCAAGCTATAGTTCTAAGCTCAGTTCAACCATACGAAGCGCGCTGGAGCGCCGAAGCCTTCTGCAACACCAATCAACTAAGATTACTCAAGTTATGTGAGATGCAACTTCCTCTTGGCCTCAATTGCCTTCCTTGTTCACTCAAAGCTCTTCAGTGGAAAGGATCTCCTTTGAAAACTCTACCACCTAGTAATCAATTGGATGAGCTTGTTCACCTCAATCTGTCTCATAGCAAAATTGAACAACTTTGGCATGGAAAAAAGATTCTTAAGAAGCTGAGGTTTATTAATTTGAGTTTCTCCAAGAACCTAAAGAAGACTGGTGACTTTGATGGGGCTCCAAATCTTGAATCATTGGTTCTTGAAGGTTGTACTAGTTTAACCGAAATTCATGCATCCCTTGTACGTCACAAGAAACTTGTTGTATTGAATTTGAAAGACTGCAAAAGGCTCAAAGCTTTTCCAAGTAAATTGGAGATGTGTTCATTGAAGGTTTTAAATCTATCTGGTTGCTCAGAACTGAAAATAGTCCCCGATTTTGGCGAAAACATGGAACTTCTATCAGTGCTTTCTTTAGGGGGAACTGCTATAACAAAGCTACCATCATCAGTGGGAAGTCTAGTTGGCCTTACTCAATTGAAGTTAAACAATTGCAAGAATCTTGTTTGCCTTCCAGACACCATTCATAAACTGAAGTCTCTCAAGATTTTGGATGTTTCCGGTTGCTCAAGAATTCGCAGCATGCCGGAGTGCCTTAAGGAAATCAAGTGTTTGGAGGAACTTTGTGCAAGTGAAACCGCAATCGAAGAGCTCCCTTCAAGTGTCTTCTATCTAGAAAATCTCAGAGAAATCTCATTTGCTGGTTGCAAGGGACCAGTATCTAATTCAATGGACATGTTTCAACCTTTTAAGTGGTTGTTTGGAAGTCAACAAGCTTCAACTGGATTTCGCTTGCCACCTTCAATCTCCTGCATACACCATTTGAGGAGAGTAGATTTTAGTTACTGCAATTTATCTGATGAATCAATGCCAGATGATTTTTTCCATTTACCTTCATTGAGGATTTTAGATCTCTCTGGCAATGAGTTTGTTAGCATGCCTAGCAGCATATCCAAACTTCCAATGCTTCAGTATCTTTATATAAATTGGTGCAAAAATCTTCAATCTTTGCCAGAGCTTCCATCAAGCATAAGAGAATTGGATGCAAGCAACTGTGCCTCACTTGAAGATTCCAAACTCAATCCATCTAAACCATGCAGTCTCTTTGCATCACCTCTGCAATGGCGCTTTCCTATACAAGAGATCCAACTCTTTCTTGAGGGAATGAGAATTCCAGAAGCAAGATTTGACATGCTTATAACTGGGAGTGAAATTCCATCATGGTTTGTGCCTCAAAGATGCACTTCCTTTGCCAAGATACAAATCCCTCAAAATTGTCCTGTAAATGATTGGGTGGGTTTTGCATTGTGTTTCATGTTGGTAAGTTATGCAGATCCACCTGAAGTGTGCCATCATGAAGTTGAATGTTACTTGTTTGGGCCTCAGGGTAAGATGTTCATCAGCACCAGGATTTTACCTCCAATGGAGCCATGTCGCCCTCACCTTTATGTTCTTTATTTGTCCATTGACAAATTTCGTGACAGAATTCATGAAGGTGGTTACTTCTTCAAAGAAATCGAATTCGTGCTGAAACGTTATTGCTGCCAATCATTACAAATAGTCCGATGCGGCTCTCGCTTGGTGTGCAAGCAAGATCTTGAAGATATTTTTGGAAATCATTCATAG 3360 0.3976 MAMSTRWINQVFLSFRGDDTRKGFTDHLFASLERRGIKTFKDDHDLHKGASISLELFKAIQDSMFALIILSPNYASSTWCLDELQKILHCRNNLGQHVFPIFYGVDPSDVRYQRGTFGEAFSKHEERFSQDKEKVKRWRDSLREVASFSGWDSQDQHEAGLVETIVDHIQKMLIPKLPTCTDNLVGVDSRMKRVISLIGIRLDDVRFVGIWGMGGGGKTTTARLVYESIKDEFKVSCFLQNIREMHEKNNGLVQIQKELLSHLNVRISTFHNVFDGKKIIANSFRNKKVLLVLDDVSELSQLENLAEKQEWFGPGSKVIITTRDKHILASHGVLKTCEIGGLFSDEALHLLSLKAFKQDQPKEGYLDLCKEVVEYTKGLPLALEVLGSHLQGRTVEVWHSALKQIRSFPLPKIQNTLKISYDGLNSPEKDMFLDIACFFKGMDKEEVTDMLEICGGCPKIGIEILIERNLITVSATNKLEMHDLIQEMGRNIVFLESTNDPGKRSRLWSQDDIDYVLTNNKGTEAIQAIVLSSVQPYEARWSAEAFCNTNQLRLLKLCEMQLPLGLNCLPCSLKALQWKGSPLKTLPPSNQLDELVHLNLSHSKIEQLWHGKKILKKLRFINLSFSKNLKKTGDFDGAPNLESLVLEGCTSLTEIHASLVRHKKLVVLNLKDCKRLKAFPSKLEMCSLKVLNLSGCSELKIVPDFGENMELLSVLSLGGTAITKLPSSVGSLVGLTQLKLNNCKNLVCLPDTIHKLKSLKILDVSGCSRIRSMPECLKEIKCLEELCASETAIEELPSSVFYLENLREISFAGCKGPVSNSMDMFQPFKWLFGSQQASTGFRLPPSISCIHHLRRVDFSYCNLSDESMPDDFFHLPSLRILDLSGNEFVSMPSSISKLPMLQYLYINWCKNLQSLPELPSSIRELDASNCASLEDSKLNPSKPCSLFASPLQWRFPIQEIQLFLEGMRIPEARFDMLITGSEIPSWFVPQRCTSFAKIQIPQNCPVNDWVGFALCFMLVSYADPPEVCHHEVECYLFGPQGKMFISTRILPPMEPCRPHLYVLYLSIDKFRDRIHEGGYFFKEIEFVLKRYCCQSLQIVRCGSRLVCKQDLEDIFGNHS 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211454g00038 1119 SMART LRR_typ_2 592 617 IPR003591 -
Stsc211454g00038 1119 SMART LRR_typ_2 875 898 IPR003591 -
Stsc211454g00038 1119 SMART LRR_typ_2 709 732 IPR003591 -
Stsc211454g00038 1119 Pfam C-JID domain 979 1112 IPR045344 -
Stsc211454g00038 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 435 IPR027417 -
Stsc211454g00038 1119 SUPERFAMILY "Winged helix" DNA-binding domain 412 517 IPR036390 -
Stsc211454g00038 1119 Pfam TIR domain 10 184 IPR000157 GO:0007165
Stsc211454g00038 1119 Gene3D - 173 335 IPR027417 -
Stsc211454g00038 1119 PRINTS Disease resistance protein signature 376 390 - -
Stsc211454g00038 1119 PRINTS Disease resistance protein signature 283 297 - -
Stsc211454g00038 1119 PRINTS Disease resistance protein signature 754 770 - -
Stsc211454g00038 1119 PRINTS Disease resistance protein signature 207 222 - -
Stsc211454g00038 1119 Gene3D - 342 425 IPR042197 -
Stsc211454g00038 1119 Gene3D Ribonuclease Inhibitor 685 822 IPR032675 -
Stsc211454g00038 1119 Gene3D Ribonuclease Inhibitor 830 948 IPR032675 -
Stsc211454g00038 1119 Gene3D Ribonuclease Inhibitor 540 684 IPR032675 -
Stsc211454g00038 1119 SUPERFAMILY RNI-like 569 918 - -
Stsc211454g00038 1119 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 151 IPR035897 -
Stsc211454g00038 1119 Pfam Leucine Rich repeat 851 867 IPR001611 GO:0005515
Stsc211454g00038 1119 Gene3D - 3 172 IPR035897 -
Stsc211454g00038 1119 Pfam NB-ARC domain 203 421 IPR002182 GO:0043531
Stsc211454g00038 1119 ProSiteProfiles TIR domain profile. 7 173 IPR000157 GO:0007165
Stsc211454g00038 1119 SMART till_3 8 148 IPR000157 GO:0007165
Stsc211454g00038 1119 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 704 IPR044974 GO:0006952
Stsc211454g00038 1119 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211454g00038 Stsc-Chr211454 259282 263603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211454g00038 4 825 WRKY Transcription Factor Family AT4G12020 33.177 2.79e-115 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211454g00038 - - gmx:100815486 1548.1