Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc211454g00035 | ATGTTCTGGCTCTTGTGCACCTTGTTGTTGCCGGCGATGACCAGCTCTGGCCGATGTCAACGGAGGAAGGACATGGCGGCTTCCGGTGCTCAACAACGGGCGGATTCCGCCGAGGCTACGCTGTCGCCGGTGGATTCTCCGGCGGAATTGCCGGTAACCTCCAATAATTCCGCTGTGTACGAAATTGACTACTTTTCTCAGGCGAGGAAGGCCCTGACCGAGCGTTCCCCTTATGAAGAAGAAGCGTCCACTTCTGGGGTGGTTACTCTGCCAAGTGGATTAGCTAGTTTGCTGAACCGCCATGGGGATAACCGTCGGCGGCATAAGAAGGTTCGGTCCGGGGGCGAGAAGAAGAAGAAGAAATCATCTAGGGGGAGCGAGAAGGCACGTGCTTTCAACATTTGGGACGAGACTGAGGAGTATTTTAGGGACTTGTCGTTGAGTGATATTGATACCTTAGTGGATGTTTCTTCGCTGTCTAGGTTAGCTTCTGGCGAGTGTTTCTCTATTCCGGTTTTGGGGAATTCTCCGAGACTCAATATAGTAGTTAATAGTAGTGAGGAGGAAAAGAAAGATGCAATGAAAGTGGACTTAGTTAGTGGCGAGGATGATAAAAAGGTTGATGAAGACTTGGGAAGTGAGGAATGTATAATGGGAGTGGAGTCGATTGACAATGTTGCTGCCGAAAACGGTTTGCCTCAGGATGATGGAAAAAATGTCTCGTGTGTTAGTTTAGAGTGGCTATTAGGTTGTAGGAGTAAGGTTTCTTTGACTTCTGAGCGCCCTAAAAAGAAAAGGAAGCTTTTGAATGGGGATGCTGATTTACAGAAAGTTCTAATGACCAGTCCTAGTGATGGGGATGGACCATTTTGTCATTATTGTGGCACTGGAGATGCCGGCAGAGATTTGAACCGGTTGGTTGTTTGTGCCTCTTGTAAAGTGGCAGTTCATCAAATGTGCTATGGTGTGCAAGATGGTGTAGATGAGTCTTGGTTGTGCTCGTGGTGTAAGCTAAAACGTGGGGTTGAGGGGACGGTAAATCCTTGTGTGCTTTGCCCGATTAAAGGTGGTGCTCTGAAACCAGTTGATGGCACTGTGGAAGGCGTTGAGTCTGTGAATTTTGTGCACTTGTTTTGTTCTCTGTGGATGCCCGAGGTTTATGTAGACGATTTGAAGAAGATGGAACCTGTTATGAATGTGGGGTCAATAAAGGAAACCCGGAGAAAATTGGTGTGTAATATTTGCAAACTGAAGTGGGGTGCATGTGTTCGGTGTAGCCATGGAACCTGCAGGACTTCTTTCCATCCGTTATGTGCAAGGGAAGCTCGACACAGGATGGAGGTGTGCGCAAAGTATGGAGATGACAATATTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGACTCACAAGATAACAGGGGCATCTTGCCATTAGGAGACTCCCTTGCTATTGGCAATAATTTTCTTGAAGCTAATGGCCTTCCAGTAAATAGCAAGCACAAGTTGAAAATTGGATGTGGTAGTCCCAATAAGTTGAACCACAATGGACTGCAAGATGTAGGACTGTCTGATTGCAGGATAATTGCCGGTAACCTGTCTGGATGTGGTGCTGTTCAGCAACATAATGTTGGAATGGTAGGGAAGACCAATGAGAATGGTGTTGCATCTGACTCCCTCAGTTTTGCACTTGTTTTAAAGAAGCTGATAGACCGTGGAAAAGTTGATGCAAAGGATGTAGCAATGGAGATTGGAATTTCACCAGATGCATTAACTGCAAATATCAATGAAGCTTATATGGACCCTGATGTGGCTGACAAAATAGTCACGTGGCTAAAAGCTCATGTGTACACTGCTGCATTTCATAAAGGTTTAAAAGTCAAATTCAAACCACCTGTTCCTTCCAAGGATGAAAATGAAGCTGCAGAACGTTCTGTTGCTCTTCCAATATCTGATTCGGGTTTGTTGGATCCTGTTGCTGTTAAGTCAGTACCACCAAGGAGGAGAACTGTCAGCAACATTAGGATTTTAAAGGATAATAAAGTGATATGTTCATCCGAGGGGGTTACTGGTGATATATTCAGAGCTGATCAGCTGGACCATGAAAATCCAGGAAGTTCTAATGAGGTGTCTCCAGATGCTACTGTAGTGGACATAACCAATTCTGAGGATATGCTTCCGAAAGTTCAAGGAAATGAAGATGAACCACACAAATCCAACTTATCTGAATGTGTTTCAGAAGAAATGTCCAAGCTCTATTTGCAGAATGCTTCAATGTTTTCTGATGGCTTCTGTCCTCTTTATTCTGCTGCGAAACTTCCTGATTGTGGTTCCATAAAGGTGGAAGCCAGCTCTAGCTACATTCACCCATCCATCAAGAAGTTTCTGCAGATTCATAATGGGGTGAACTTGGAGGATATTTTAGGTCCAAGGGAGAAGGGTATTTCTACTTTGGTTAAGTCTGCTGGCTCTAGTTGCTGCTCAAGTACTGATAATCAGCAATTAATGTGCACTGGTATTTCCAAGCCTGGTCAAGGAAATACAGAGCAGTTGCATGGCTCTGGAAAAATGGAACTTTTGGAATTTTCTCCAGAAGATGAAGTGGAAGGGGAACTTATATTTTTACAGCATAGATTATTGCAGAATGCAGTTGCAAAAAAGAAGTTTACTGATAACTTAATCTCCAATATTGCGAAGAGCTTGCCACAGGAGATTGATGCAGCACATCAGCAAAGGTGGGACTCTGTGATTGTTAATCGATATCTGCGTGATCTTAGGGAGGCAAAAAAGCTAGGCAGGAAAGAAAGAAAACACAAGGAAGCACAAGCTGTTCTGGCTGCTGCAACTGCTGCGGCTGCAGCATCTTCTCGGGTTTCTTCCTTCCGAAAAGACTCTATAGATGAATCTATGCAACAAGAGAATTTGTTGAAGTTGGATGCTTTAAGTGGGAGGAATGGTGCTTGTTCTCAGCCAATGCCAAGAGCTAAAGAGACACTTTCAAGAGTAGCTGTGACAAGAACGTCATCAGAGAAATATTCTGATTTCAGCTTGCCAACCTCAGAATATTCTAAGGAGCAATCTAAATCGTGTGATATCTGCAGACGCTCTGAGACTTTGTTTAACCCCATCCTTGTCTGCTCTGGTTGCAAGGTTGCCGTGCACTTGGACTGTTATCGAAGTGTGAAAGAAACTACTGGCCCATGGTACTGTGAATTATGTGAAGATGTAACATCAAGAAGCAGTGCAGCATCTGCCATCAATTTCTGGGAGAAGCCTTATTTTGTTGCAGAATGTGCCCTTTGTGGTGGTACTACTGGAGCTTTTAGGAAATCTTCTGATGGTCAATGGATTCATGCGTTCTGTGCTGAGTGGGTTTTCGAGTCAACATTCAGGAGAGGCCAAGTAAATCCAGTTGAAGGAATGGAGTCTGTTCTGAAGGGAGTTGACAAATGTTGCATTTGCCACCGCAAGCATGGTGTATGTATGAAGTGTTGCTATGGCCATTGTCAAACCTCTTTCCATCCATCATGCGCTAGAAGTGCAGGTTATTATATGATTGTGAGGACTACTAGTGGCAAACCACAACACAAGGCTTACTGTGAAAAGCATAGTTTGGAGCAAAAGGCAAAGTCTGAAAAACATGGAATTGAAGAGTTTAAAAGTATGAAGCAAGTTCGGGTTGAACTGGAGAGATTACGTCTCCTTTGTGAGAGAATTGTCAAACGTGAAAAATTGAAGCGTGAATTGGTTCTTTGCTCGCATGATATACTTGCCTTCAAAAGAGATCATGTTGCTAGGTCTGTGCTCGTTCATAGCCCTTTCATCCTTCCAGATGGTAGTTCAGAATCAGCTACAACGTCCCTGAGAGGAAACACAGAGGGATACAGATCATGCAGTGAGGCAATCCAAAGATCCGATGATATAACTGTGGACAGTTCAGTTCCAGACAAGCATCGTCTCAGAGCTGCTGTATCCATGGACACTGATCCCAAATTGGATGATGACTGCTCAACCTCACAAAGTCGCTACAATCACAGGATCCCAGAGAGAGTTCAATTTTCTGGCAAGCAGATTCCTCGAAGAGCTTATGCCGCATCACGCAATATTTCAGACGAGAGTTCTGGATTGAGATCCAAATCTAGAAAGCAAGCAGACACATTTGGCAAAGAGCTCGTAATGACGTCGGACGAAGCGTCTATGAAGAATATGAGGTTACCAAAAGGATATGCATATGTTCCTGCTGATTGTCTGTCAAATGATAAGCAGTTTAACGAGAATGTTTAA | 4281 | 0.4413 | MFWLLCTLLLPAMTSSGRCQRRKDMAASGAQQRADSAEATLSPVDSPAELPVTSNNSAVYEIDYFSQARKALTERSPYEEEASTSGVVTLPSGLASLLNRHGDNRRRHKKVRSGGEKKKKKSSRGSEKARAFNIWDETEEYFRDLSLSDIDTLVDVSSLSRLASGECFSIPVLGNSPRLNIVVNSSEEEKKDAMKVDLVSGEDDKKVDEDLGSEECIMGVESIDNVAAENGLPQDDGKNVSCVSLEWLLGCRSKVSLTSERPKKKRKLLNGDADLQKVLMTSPSDGDGPFCHYCGTGDAGRDLNRLVVCASCKVAVHQMCYGVQDGVDESWLCSWCKLKRGVEGTVNPCVLCPIKGGALKPVDGTVEGVESVNFVHLFCSLWMPEVYVDDLKKMEPVMNVGSIKETRRKLVCNICKLKWGACVRCSHGTCRTSFHPLCAREARHRMEVCAKYGDDNIELRAFCLKHSDSQDNRGILPLGDSLAIGNNFLEANGLPVNSKHKLKIGCGSPNKLNHNGLQDVGLSDCRIIAGNLSGCGAVQQHNVGMVGKTNENGVASDSLSFALVLKKLIDRGKVDAKDVAMEIGISPDALTANINEAYMDPDVADKIVTWLKAHVYTAAFHKGLKVKFKPPVPSKDENEAAERSVALPISDSGLLDPVAVKSVPPRRRTVSNIRILKDNKVICSSEGVTGDIFRADQLDHENPGSSNEVSPDATVVDITNSEDMLPKVQGNEDEPHKSNLSECVSEEMSKLYLQNASMFSDGFCPLYSAAKLPDCGSIKVEASSSYIHPSIKKFLQIHNGVNLEDILGPREKGISTLVKSAGSSCCSSTDNQQLMCTGISKPGQGNTEQLHGSGKMELLEFSPEDEVEGELIFLQHRLLQNAVAKKKFTDNLISNIAKSLPQEIDAAHQQRWDSVIVNRYLRDLREAKKLGRKERKHKEAQAVLAAATAAAAASSRVSSFRKDSIDESMQQENLLKLDALSGRNGACSQPMPRAKETLSRVAVTRTSSEKYSDFSLPTSEYSKEQSKSCDICRRSETLFNPILVCSGCKVAVHLDCYRSVKETTGPWYCELCEDVTSRSSAASAINFWEKPYFVAECALCGGTTGAFRKSSDGQWIHAFCAEWVFESTFRRGQVNPVEGMESVLKGVDKCCICHRKHGVCMKCCYGHCQTSFHPSCARSAGYYMIVRTTSGKPQHKAYCEKHSLEQKAKSEKHGIEEFKSMKQVRVELERLRLLCERIVKREKLKRELVLCSHDILAFKRDHVARSVLVHSPFILPDGSSESATTSLRGNTEGYRSCSEAIQRSDDITVDSSVPDKHRLRAAVSMDTDPKLDDDCSTSQSRYNHRIPERVQFSGKQIPRRAYAASRNISDESSGLRSKSRKQADTFGKELVMTSDEASMKNMRLPKGYAYVPADCLSNDKQFNENV | 1426 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc211454g00035 | 1426 | SUPERFAMILY | FYVE/PHD zinc finger | 1018 | 1073 | IPR011011 | - | |
Stsc211454g00035 | 1426 | Pfam | PHD-zinc-finger like domain | 348 | 466 | - | - | |
Stsc211454g00035 | 1426 | Pfam | PHD-zinc-finger like domain | 1096 | 1202 | - | - | |
Stsc211454g00035 | 1426 | ProSiteProfiles | Zinc finger PHD-type profile. | 288 | 339 | IPR019787 | - | |
Stsc211454g00035 | 1426 | MobiDBLite | consensus disorder prediction | 1320 | 1339 | - | - | |
Stsc211454g00035 | 1426 | ProSitePatterns | Zinc finger PHD-type signature. | 1029 | 1072 | IPR019786 | - | |
Stsc211454g00035 | 1426 | ProSiteProfiles | Zinc finger PHD-type profile. | 1026 | 1075 | IPR019787 | - | |
Stsc211454g00035 | 1426 | MobiDBLite | consensus disorder prediction | 102 | 119 | - | - | |
Stsc211454g00035 | 1426 | SUPERFAMILY | FYVE/PHD zinc finger | 280 | 339 | IPR011011 | - | |
Stsc211454g00035 | 1426 | SMART | PHD_3 | 290 | 337 | IPR001965 | - | |
Stsc211454g00035 | 1426 | SMART | PHD_3 | 1028 | 1073 | IPR001965 | - | |
Stsc211454g00035 | 1426 | SMART | PHD_3 | 411 | 467 | IPR001965 | - | |
Stsc211454g00035 | 1426 | SMART | PHD_3 | 1149 | 1203 | IPR001965 | - | |
Stsc211454g00035 | 1426 | MobiDBLite | consensus disorder prediction | 27 | 52 | - | - | |
Stsc211454g00035 | 1426 | CDD | ePHD | 1097 | 1202 | - | - | |
Stsc211454g00035 | 1426 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 278 | 341 | IPR013083 | - | |
Stsc211454g00035 | 1426 | ProSitePatterns | Zinc finger PHD-type signature. | 291 | 336 | IPR019786 | - | |
Stsc211454g00035 | 1426 | MobiDBLite | consensus disorder prediction | 1363 | 1389 | - | - | |
Stsc211454g00035 | 1426 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 344 | 469 | IPR013083 | - | |
Stsc211454g00035 | 1426 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1094 | 1204 | IPR013083 | - | |
Stsc211454g00035 | 1426 | MobiDBLite | consensus disorder prediction | 101 | 129 | - | - | |
Stsc211454g00035 | 1426 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1004 | 1083 | IPR013083 | - | |
Stsc211454g00035 | 1426 | Pfam | PHD-finger | 304 | 337 | - | - | |
Stsc211454g00035 | 1426 | Pfam | PHD-finger | 1040 | 1073 | - | - | |
Stsc211454g00035 | 1426 | PANTHER | PHD FINGER PROTEINS | 83 | 964 | - | - | |
Stsc211454g00035 | 1426 | Coils | Coil | 1221 | 1241 | - | - | |
Stsc211454g00035 | 1426 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 1094 | 1203 | IPR034732 | - | |
Stsc211454g00035 | 1426 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 346 | 467 | IPR034732 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc211454g00035 | Stsc-Chr211454 | 234538 | 244009 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc211454g00035 | 285 | 452 | C2H2 Transcription Factor Family | AT3G14740 | 32.558 | 5.33e-18 | 85.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Stsc211454g00035 | zf-HC5HC2H_2 | 3.6e-23 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc211454g00035 | - | - | gmx:100775631 | 1860.88 |