Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211454g00035 ATGTTCTGGCTCTTGTGCACCTTGTTGTTGCCGGCGATGACCAGCTCTGGCCGATGTCAACGGAGGAAGGACATGGCGGCTTCCGGTGCTCAACAACGGGCGGATTCCGCCGAGGCTACGCTGTCGCCGGTGGATTCTCCGGCGGAATTGCCGGTAACCTCCAATAATTCCGCTGTGTACGAAATTGACTACTTTTCTCAGGCGAGGAAGGCCCTGACCGAGCGTTCCCCTTATGAAGAAGAAGCGTCCACTTCTGGGGTGGTTACTCTGCCAAGTGGATTAGCTAGTTTGCTGAACCGCCATGGGGATAACCGTCGGCGGCATAAGAAGGTTCGGTCCGGGGGCGAGAAGAAGAAGAAGAAATCATCTAGGGGGAGCGAGAAGGCACGTGCTTTCAACATTTGGGACGAGACTGAGGAGTATTTTAGGGACTTGTCGTTGAGTGATATTGATACCTTAGTGGATGTTTCTTCGCTGTCTAGGTTAGCTTCTGGCGAGTGTTTCTCTATTCCGGTTTTGGGGAATTCTCCGAGACTCAATATAGTAGTTAATAGTAGTGAGGAGGAAAAGAAAGATGCAATGAAAGTGGACTTAGTTAGTGGCGAGGATGATAAAAAGGTTGATGAAGACTTGGGAAGTGAGGAATGTATAATGGGAGTGGAGTCGATTGACAATGTTGCTGCCGAAAACGGTTTGCCTCAGGATGATGGAAAAAATGTCTCGTGTGTTAGTTTAGAGTGGCTATTAGGTTGTAGGAGTAAGGTTTCTTTGACTTCTGAGCGCCCTAAAAAGAAAAGGAAGCTTTTGAATGGGGATGCTGATTTACAGAAAGTTCTAATGACCAGTCCTAGTGATGGGGATGGACCATTTTGTCATTATTGTGGCACTGGAGATGCCGGCAGAGATTTGAACCGGTTGGTTGTTTGTGCCTCTTGTAAAGTGGCAGTTCATCAAATGTGCTATGGTGTGCAAGATGGTGTAGATGAGTCTTGGTTGTGCTCGTGGTGTAAGCTAAAACGTGGGGTTGAGGGGACGGTAAATCCTTGTGTGCTTTGCCCGATTAAAGGTGGTGCTCTGAAACCAGTTGATGGCACTGTGGAAGGCGTTGAGTCTGTGAATTTTGTGCACTTGTTTTGTTCTCTGTGGATGCCCGAGGTTTATGTAGACGATTTGAAGAAGATGGAACCTGTTATGAATGTGGGGTCAATAAAGGAAACCCGGAGAAAATTGGTGTGTAATATTTGCAAACTGAAGTGGGGTGCATGTGTTCGGTGTAGCCATGGAACCTGCAGGACTTCTTTCCATCCGTTATGTGCAAGGGAAGCTCGACACAGGATGGAGGTGTGCGCAAAGTATGGAGATGACAATATTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGACTCACAAGATAACAGGGGCATCTTGCCATTAGGAGACTCCCTTGCTATTGGCAATAATTTTCTTGAAGCTAATGGCCTTCCAGTAAATAGCAAGCACAAGTTGAAAATTGGATGTGGTAGTCCCAATAAGTTGAACCACAATGGACTGCAAGATGTAGGACTGTCTGATTGCAGGATAATTGCCGGTAACCTGTCTGGATGTGGTGCTGTTCAGCAACATAATGTTGGAATGGTAGGGAAGACCAATGAGAATGGTGTTGCATCTGACTCCCTCAGTTTTGCACTTGTTTTAAAGAAGCTGATAGACCGTGGAAAAGTTGATGCAAAGGATGTAGCAATGGAGATTGGAATTTCACCAGATGCATTAACTGCAAATATCAATGAAGCTTATATGGACCCTGATGTGGCTGACAAAATAGTCACGTGGCTAAAAGCTCATGTGTACACTGCTGCATTTCATAAAGGTTTAAAAGTCAAATTCAAACCACCTGTTCCTTCCAAGGATGAAAATGAAGCTGCAGAACGTTCTGTTGCTCTTCCAATATCTGATTCGGGTTTGTTGGATCCTGTTGCTGTTAAGTCAGTACCACCAAGGAGGAGAACTGTCAGCAACATTAGGATTTTAAAGGATAATAAAGTGATATGTTCATCCGAGGGGGTTACTGGTGATATATTCAGAGCTGATCAGCTGGACCATGAAAATCCAGGAAGTTCTAATGAGGTGTCTCCAGATGCTACTGTAGTGGACATAACCAATTCTGAGGATATGCTTCCGAAAGTTCAAGGAAATGAAGATGAACCACACAAATCCAACTTATCTGAATGTGTTTCAGAAGAAATGTCCAAGCTCTATTTGCAGAATGCTTCAATGTTTTCTGATGGCTTCTGTCCTCTTTATTCTGCTGCGAAACTTCCTGATTGTGGTTCCATAAAGGTGGAAGCCAGCTCTAGCTACATTCACCCATCCATCAAGAAGTTTCTGCAGATTCATAATGGGGTGAACTTGGAGGATATTTTAGGTCCAAGGGAGAAGGGTATTTCTACTTTGGTTAAGTCTGCTGGCTCTAGTTGCTGCTCAAGTACTGATAATCAGCAATTAATGTGCACTGGTATTTCCAAGCCTGGTCAAGGAAATACAGAGCAGTTGCATGGCTCTGGAAAAATGGAACTTTTGGAATTTTCTCCAGAAGATGAAGTGGAAGGGGAACTTATATTTTTACAGCATAGATTATTGCAGAATGCAGTTGCAAAAAAGAAGTTTACTGATAACTTAATCTCCAATATTGCGAAGAGCTTGCCACAGGAGATTGATGCAGCACATCAGCAAAGGTGGGACTCTGTGATTGTTAATCGATATCTGCGTGATCTTAGGGAGGCAAAAAAGCTAGGCAGGAAAGAAAGAAAACACAAGGAAGCACAAGCTGTTCTGGCTGCTGCAACTGCTGCGGCTGCAGCATCTTCTCGGGTTTCTTCCTTCCGAAAAGACTCTATAGATGAATCTATGCAACAAGAGAATTTGTTGAAGTTGGATGCTTTAAGTGGGAGGAATGGTGCTTGTTCTCAGCCAATGCCAAGAGCTAAAGAGACACTTTCAAGAGTAGCTGTGACAAGAACGTCATCAGAGAAATATTCTGATTTCAGCTTGCCAACCTCAGAATATTCTAAGGAGCAATCTAAATCGTGTGATATCTGCAGACGCTCTGAGACTTTGTTTAACCCCATCCTTGTCTGCTCTGGTTGCAAGGTTGCCGTGCACTTGGACTGTTATCGAAGTGTGAAAGAAACTACTGGCCCATGGTACTGTGAATTATGTGAAGATGTAACATCAAGAAGCAGTGCAGCATCTGCCATCAATTTCTGGGAGAAGCCTTATTTTGTTGCAGAATGTGCCCTTTGTGGTGGTACTACTGGAGCTTTTAGGAAATCTTCTGATGGTCAATGGATTCATGCGTTCTGTGCTGAGTGGGTTTTCGAGTCAACATTCAGGAGAGGCCAAGTAAATCCAGTTGAAGGAATGGAGTCTGTTCTGAAGGGAGTTGACAAATGTTGCATTTGCCACCGCAAGCATGGTGTATGTATGAAGTGTTGCTATGGCCATTGTCAAACCTCTTTCCATCCATCATGCGCTAGAAGTGCAGGTTATTATATGATTGTGAGGACTACTAGTGGCAAACCACAACACAAGGCTTACTGTGAAAAGCATAGTTTGGAGCAAAAGGCAAAGTCTGAAAAACATGGAATTGAAGAGTTTAAAAGTATGAAGCAAGTTCGGGTTGAACTGGAGAGATTACGTCTCCTTTGTGAGAGAATTGTCAAACGTGAAAAATTGAAGCGTGAATTGGTTCTTTGCTCGCATGATATACTTGCCTTCAAAAGAGATCATGTTGCTAGGTCTGTGCTCGTTCATAGCCCTTTCATCCTTCCAGATGGTAGTTCAGAATCAGCTACAACGTCCCTGAGAGGAAACACAGAGGGATACAGATCATGCAGTGAGGCAATCCAAAGATCCGATGATATAACTGTGGACAGTTCAGTTCCAGACAAGCATCGTCTCAGAGCTGCTGTATCCATGGACACTGATCCCAAATTGGATGATGACTGCTCAACCTCACAAAGTCGCTACAATCACAGGATCCCAGAGAGAGTTCAATTTTCTGGCAAGCAGATTCCTCGAAGAGCTTATGCCGCATCACGCAATATTTCAGACGAGAGTTCTGGATTGAGATCCAAATCTAGAAAGCAAGCAGACACATTTGGCAAAGAGCTCGTAATGACGTCGGACGAAGCGTCTATGAAGAATATGAGGTTACCAAAAGGATATGCATATGTTCCTGCTGATTGTCTGTCAAATGATAAGCAGTTTAACGAGAATGTTTAA 4281 0.4413 MFWLLCTLLLPAMTSSGRCQRRKDMAASGAQQRADSAEATLSPVDSPAELPVTSNNSAVYEIDYFSQARKALTERSPYEEEASTSGVVTLPSGLASLLNRHGDNRRRHKKVRSGGEKKKKKSSRGSEKARAFNIWDETEEYFRDLSLSDIDTLVDVSSLSRLASGECFSIPVLGNSPRLNIVVNSSEEEKKDAMKVDLVSGEDDKKVDEDLGSEECIMGVESIDNVAAENGLPQDDGKNVSCVSLEWLLGCRSKVSLTSERPKKKRKLLNGDADLQKVLMTSPSDGDGPFCHYCGTGDAGRDLNRLVVCASCKVAVHQMCYGVQDGVDESWLCSWCKLKRGVEGTVNPCVLCPIKGGALKPVDGTVEGVESVNFVHLFCSLWMPEVYVDDLKKMEPVMNVGSIKETRRKLVCNICKLKWGACVRCSHGTCRTSFHPLCAREARHRMEVCAKYGDDNIELRAFCLKHSDSQDNRGILPLGDSLAIGNNFLEANGLPVNSKHKLKIGCGSPNKLNHNGLQDVGLSDCRIIAGNLSGCGAVQQHNVGMVGKTNENGVASDSLSFALVLKKLIDRGKVDAKDVAMEIGISPDALTANINEAYMDPDVADKIVTWLKAHVYTAAFHKGLKVKFKPPVPSKDENEAAERSVALPISDSGLLDPVAVKSVPPRRRTVSNIRILKDNKVICSSEGVTGDIFRADQLDHENPGSSNEVSPDATVVDITNSEDMLPKVQGNEDEPHKSNLSECVSEEMSKLYLQNASMFSDGFCPLYSAAKLPDCGSIKVEASSSYIHPSIKKFLQIHNGVNLEDILGPREKGISTLVKSAGSSCCSSTDNQQLMCTGISKPGQGNTEQLHGSGKMELLEFSPEDEVEGELIFLQHRLLQNAVAKKKFTDNLISNIAKSLPQEIDAAHQQRWDSVIVNRYLRDLREAKKLGRKERKHKEAQAVLAAATAAAAASSRVSSFRKDSIDESMQQENLLKLDALSGRNGACSQPMPRAKETLSRVAVTRTSSEKYSDFSLPTSEYSKEQSKSCDICRRSETLFNPILVCSGCKVAVHLDCYRSVKETTGPWYCELCEDVTSRSSAASAINFWEKPYFVAECALCGGTTGAFRKSSDGQWIHAFCAEWVFESTFRRGQVNPVEGMESVLKGVDKCCICHRKHGVCMKCCYGHCQTSFHPSCARSAGYYMIVRTTSGKPQHKAYCEKHSLEQKAKSEKHGIEEFKSMKQVRVELERLRLLCERIVKREKLKRELVLCSHDILAFKRDHVARSVLVHSPFILPDGSSESATTSLRGNTEGYRSCSEAIQRSDDITVDSSVPDKHRLRAAVSMDTDPKLDDDCSTSQSRYNHRIPERVQFSGKQIPRRAYAASRNISDESSGLRSKSRKQADTFGKELVMTSDEASMKNMRLPKGYAYVPADCLSNDKQFNENV 1426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211454g00035 1426 SUPERFAMILY FYVE/PHD zinc finger 1018 1073 IPR011011 -
Stsc211454g00035 1426 Pfam PHD-zinc-finger like domain 348 466 - -
Stsc211454g00035 1426 Pfam PHD-zinc-finger like domain 1096 1202 - -
Stsc211454g00035 1426 ProSiteProfiles Zinc finger PHD-type profile. 288 339 IPR019787 -
Stsc211454g00035 1426 MobiDBLite consensus disorder prediction 1320 1339 - -
Stsc211454g00035 1426 ProSitePatterns Zinc finger PHD-type signature. 1029 1072 IPR019786 -
Stsc211454g00035 1426 ProSiteProfiles Zinc finger PHD-type profile. 1026 1075 IPR019787 -
Stsc211454g00035 1426 MobiDBLite consensus disorder prediction 102 119 - -
Stsc211454g00035 1426 SUPERFAMILY FYVE/PHD zinc finger 280 339 IPR011011 -
Stsc211454g00035 1426 SMART PHD_3 290 337 IPR001965 -
Stsc211454g00035 1426 SMART PHD_3 1028 1073 IPR001965 -
Stsc211454g00035 1426 SMART PHD_3 411 467 IPR001965 -
Stsc211454g00035 1426 SMART PHD_3 1149 1203 IPR001965 -
Stsc211454g00035 1426 MobiDBLite consensus disorder prediction 27 52 - -
Stsc211454g00035 1426 CDD ePHD 1097 1202 - -
Stsc211454g00035 1426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 341 IPR013083 -
Stsc211454g00035 1426 ProSitePatterns Zinc finger PHD-type signature. 291 336 IPR019786 -
Stsc211454g00035 1426 MobiDBLite consensus disorder prediction 1363 1389 - -
Stsc211454g00035 1426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 469 IPR013083 -
Stsc211454g00035 1426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1094 1204 IPR013083 -
Stsc211454g00035 1426 MobiDBLite consensus disorder prediction 101 129 - -
Stsc211454g00035 1426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1004 1083 IPR013083 -
Stsc211454g00035 1426 Pfam PHD-finger 304 337 - -
Stsc211454g00035 1426 Pfam PHD-finger 1040 1073 - -
Stsc211454g00035 1426 PANTHER PHD FINGER PROTEINS 83 964 - -
Stsc211454g00035 1426 Coils Coil 1221 1241 - -
Stsc211454g00035 1426 ProSiteProfiles Extended PHD (ePHD) domain profile. 1094 1203 IPR034732 -
Stsc211454g00035 1426 ProSiteProfiles Extended PHD (ePHD) domain profile. 346 467 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211454g00035 Stsc-Chr211454 234538 244009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211454g00035 285 452 C2H2 Transcription Factor Family AT3G14740 32.558 5.33e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc211454g00035 zf-HC5HC2H_2 3.6e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211454g00035 - - gmx:100775631 1860.88