Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211454g00028 ATGGATTCCAAGAAGCACCGAAGGAAGCCCAAGCTCGAGCGCCGCAATGCCGTCAAGTACGTTGACTACGACGCCGACGGCTCCACCACCTCCTCTCACGACGATTCCTCTTCCTCCGTCGGTGGCGGAAGCAGAACCTCTTCCATTTACACCCAATCCATGGAGTTCTACGACCGTACTAGCTTCCGTATTGAGGGAACCGAGGGCGAGTTCGACCGGATTTGCCGGAGCTTGGGGCTCTCCGGCCCGGAGGACTTCGCCATACCGGCGGCGGCCTGGGAAGCCATGAAGGTCCGATCGTCGTCGGATATTCTCCCGAGGCTGAAGCCGAGGGAAGAGCGAGAGCCACCGCGGCGGAGCGACGTCGCTGCAGCGGGTGGATTGGCCGAGGAATTCGAAGGTGGAGCTAGGGTTAGGGTTGAAAGCGCTGGTAATTCGGTTCGAGACGAGCCTGCTGAGACCAGCGGTTGCTGCGCGGAGAGCCCCGGTGGCGCATGCGGAGGAATCAAAGGGGTTCGTCCACCGATGCTTAGGCCGCCGCCGGGGACGAAGGTTCCTGTGGTAGACAACACAAGCTCCACTTGGGACCTATTAAGGGACTTTGCTCCAGAAGGTGCAGACAACGAACACTTACTACAGATAGAACCAGATAAAGAAGAAGAGGAAGAAGAAGAAAAGGAAGTGGTAGTGGTGGAAGAAGGAGGAGAAGCTAAGAGAGAAGAAGAAGAGGAGGTGGAAGAAAGGGGGGATAATGCTGCGGCGATTGCGGAGATTGTTGCTGATCTTTCGGGGTCGTGTGGTTTTAGCACTTCAAATGAAGAAGATGATACTTCAAGCACTACCACGGGTCCTAGGTCTAACAATATATCTCCCAATGGAAGAATCAAGCGTATTATTAACACTGGCGATTGGCAAAAGGGTGAGCTTCTTGGGCGTGGTTCCTTTGGCTCAGTCTATGAAGGAATTTCTGGAGATGGATTCTTTTTTGCTGTGAAAGAAGTTTCACTGCTTGATCAAGATAATCAGGGAAAGCAAAGTATCTATCAACTGGAGCAGGAGATAGCACTTTTGAGTCAGTTTGAACATGAGAACATAGTTCAATACTTTGGCACAGAAACGGATGAATCAAAGCTATATATCTTTCTTGAGCTTGTAACCAAAGGTTCTCTTGCAAGCCTTTATCACAGGTATACTCTTCGAGATTCCCAAGTCTCTGCCTATACAAGACAGATTCTGCATGGCTTGAAGTATCTTCACGATCGAAATGTGCTTCACAGGGATATTAAATGTGCAAATATATTGGTGGATGCAAATGGATCTGTCAAGCTTGCTGATTTTGGATTGGCAAAGGCAACCAAATTGAATGACATTAAATCATGCAGAGGGACACCACTATGGATGGCTCCTGAGGTTGTGAAAGGAAAGAACCAAGGTTATGGGCTCCCAGCTGATATGTGGAGTTTGGGATGCACTGTACTAGAAATGTTAACAGGCAAACTTCCATATTCGGAGTTTGAAAGCATGCAGGCATTATATAGAATTGGGAAAGGTGAGCGTCCTTCTATGCCTGACTCTCTTTCAAAGGACGCTCGAGACTTTATCCTGCAGTGCCTTCAAGTTAATCCAGATCACCGTCCCACTGCTGCGCAACTCTTAAGCCATCCATTTATTCAAAGACCAGTTTCCCACTCCTCAGGCTCATTTCCTAATCTTCCGGGCCGAAAAGGTTAA 1731 0.4939 MDSKKHRRKPKLERRNAVKYVDYDADGSTTSSHDDSSSSVGGGSRTSSIYTQSMEFYDRTSFRIEGTEGEFDRICRSLGLSGPEDFAIPAAAWEAMKVRSSSDILPRLKPREEREPPRRSDVAAAGGLAEEFEGGARVRVESAGNSVRDEPAETSGCCAESPGGACGGIKGVRPPMLRPPPGTKVPVVDNTSSTWDLLRDFAPEGADNEHLLQIEPDKEEEEEEEKEVVVVEEGGEAKREEEEEVEERGDNAAAIAEIVADLSGSCGFSTSNEEDDTSSTTTGPRSNNISPNGRIKRIINTGDWQKGELLGRGSFGSVYEGISGDGFFFAVKEVSLLDQDNQGKQSIYQLEQEIALLSQFEHENIVQYFGTETDESKLYIFLELVTKGSLASLYHRYTLRDSQVSAYTRQILHGLKYLHDRNVLHRDIKCANILVDANGSVKLADFGLAKATKLNDIKSCRGTPLWMAPEVVKGKNQGYGLPADMWSLGCTVLEMLTGKLPYSEFESMQALYRIGKGERPSMPDSLSKDARDFILQCLQVNPDHRPTAAQLLSHPFIQRPVSHSSGSFPNLPGRKG 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211454g00028 576 SUPERFAMILY Protein kinase-like (PK-like) 300 560 IPR011009 -
Stsc211454g00028 576 MobiDBLite consensus disorder prediction 266 293 - -
Stsc211454g00028 576 Gene3D Transferase(Phosphotransferase) domain 1 301 568 - -
Stsc211454g00028 576 ProSiteProfiles Protein kinase domain profile. 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211454g00028 576 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 61 564 - -
Stsc211454g00028 576 MobiDBLite consensus disorder prediction 231 249 - -
Stsc211454g00028 576 FunFam Mitogen-activated protein kinase 1, putative, expressed 302 569 - -
Stsc211454g00028 576 MobiDBLite consensus disorder prediction 108 127 - -
Stsc211454g00028 576 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Stsc211454g00028 576 MobiDBLite consensus disorder prediction 217 249 - -
Stsc211454g00028 576 SMART serkin_6 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211454g00028 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Stsc211454g00028 576 MobiDBLite consensus disorder prediction 25 50 - -
Stsc211454g00028 576 MobiDBLite consensus disorder prediction 1 50 - -
Stsc211454g00028 576 Pfam Protein kinase domain 305 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211454g00028 Stsc-Chr211454 181923 186713 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211454g00028 11 561 MAP Kinase Kinase Kinase AT4G08500 50.252 1.30e-171 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc211454g00028 Pkinase 9.5e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211454g00028 K13414 - gmx:100819999 707.212