LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211454g00019	ATGGCTCAAACGCTAGCAATGCCCGTAGCTCCCTCCCTCGCCCTAATCTCAAACCCTAAACCTCTTTCGAGAGCCGTCTCCTTCCCCGTTCTCAACCCTCCCAAGGTGAGAGGGTTAAGCATAGAGTGCGCTCGTGTTGGAGGAGTTGAGATTCCGAACAACAAGAGAATCGAGTTCTCGCTACAGTACATCCATGGAATCGGAAGGACCAGAGCTCGCCAGATTCTATGCGATATAAACATGGATAACAAGGTCACTAAGGAGCTCAGCGAGGAGGAACTCATCACTCTTAGGGATGAAGTCTCTAAATACGTCATCGAAGGCGATTTGAGGAGGTTTAATGCGCTGAATATAAGGAGATTGAAGGAGATTCAGTGCTACAGAGGAATAAGGCATATTCAGGGGCTTCCTTGCCGAGGACAGCGTACAAAGAACAATTGCAGGACCTTGAAGGGTAAGAAGGTTGCTATTGCTGGCAAGAAGAAGAAGTAA	492	0.4817	MAQTLAMPVAPSLALISNPKPLSRAVSFPVLNPPKVRGLSIECARVGGVEIPNNKRIEFSLQYIHGIGRTRARQILCDINMDNKVTKELSEEELITLRDEVSKYVIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK	163

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211454g00019	163	NCBIfam	30S ribosomal protein S13	45	154	IPR019980	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Stsc211454g00019	163	Pfam	Ribosomal protein S13/S18	45	149	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Stsc211454g00019	163	Gene3D	30s ribosomal protein s13, domain 2	113	163	IPR027437	-
	Stsc211454g00019	163	SUPERFAMILY	S13-like H2TH domain	44	155	IPR010979	GO:0003676
	Stsc211454g00019	163	Gene3D	-	44	112	-	-
	Stsc211454g00019	163	PANTHER	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	39	161	-	-
	Stsc211454g00019	163	Hamap	30S ribosomal protein S13 [rpsM].	43	159	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Stsc211454g00019	163	FunFam	30S ribosomal protein S13	113	162	-	-
	Stsc211454g00019	163	ProSiteProfiles	Ribosomal protein S13 family profile.	46	152	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Stsc211454g00019	163	FunFam	30S ribosomal protein S13	39	112	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211454g00019	Stsc-Chr211454	131494	132443	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211454g00019	45	161	Cytoplasmic Ribosomal Protein Gene Family	AT4G09800	33.566	4.16e-09	50.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211454g00019	K02952		-	gmx:100499902	261.536

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