Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211454g00005 ATGGAGGATTTGCAGAGTGTTCTTGTGGATCTTAACTTAACAGTTTCCAGTGTTCCAGAAAAGGGTCGTTCCCTCTTTGCAACAAAGGATTTCTACCCTGGGGAGGTAATCATAAGTCAAGAGCCTTATGTTTTTGTTCCAAACAACAACTCGGTTAAGAAAAGGTGCGAAAGATGTTTCACTACTAGCTTTAAGAAATGCGCACGCTGCCAACTTGTGTTGTATTGTGGAAGGTCTTGTCAGAAGGCAGAGTGGAAGTTTCATCGTCTTGAATGCGAGGCCCTCTCTCGGCTAGATGATGACAAGAGAAAATATGTCACACCATCCATTCGACTGATGGTGAAACTTTATCTTCGAAGGAAGTTGCAAAATGACAAGATCATACCAAGCACTGTTATGGACAACTACAACTTGGTGGAGGCTTTAGTGTCTCACATGTCTGACATCACCGAGGAGCAACTGCTGCTGTACGCACAGATGGCTAATCTAGTAAACGTGATACTACAGTGGCCTGAAATCAATATAAAAGAGATTGCAGAAAATTTCTCTAAGTTTGCATGCAATGCACATACCATTTGTGACAGCGAGTTGAGACCATTGGGAACAGGATTGTATCCCGTTATTTCCATTATCAATCACAGCTGCTCGCCCAATTCTGTATTAGTTTTCAAGGAAAGGACAGCGTCAGTACGTGCTGTGCAACATGTTCCCAAAGGTAGTGAGGTACTAATAAGTTACATAGAGACTGCTGGAAGCACTATGACTCGACAGAAAGCTCTCAAAGAGCAGTACCTATTCAAGTGTACATGTCCTCGCTGTTCTAAACTGGGCCAGTATGATGATATCCAAGAAAGTGCAATTCTAGAAGGATACAGATGTAAAAATGAAAAATGTGACGGTTTCTTGCTTCGTACTACTGATGGAAATGGATTCCAATGCCAAAAATGTGGACTGGTTAGGGAAAAGGAAGAGATAAAGAAAATTGCAACCGAGACAAAATCACTATCAGAAGAAGAAGCTTCTAAGCTTTCATCTGCTGTCCATTGTCAAGAAGCTATTTCCATATATAAAACGATTGAGAAACTGCAAACAAAACTCTATCATCCTTTCTCCATCAACTTGATGCGAACTCGAGAGAAGATTTTGAAGTTATTGATGGAGGTGGAAGAATGGAGTGAGGCTTTAGCATACTGCAAATTGACCATACCAGTCTATCAAAGTGCATATCCAGCTATTCACCCTCTGCTCGGTTTGCAGTACTATACATGTGGAAAACTTGAATGGTATCTGAAAGAAACAGAGGAAGCTGTTAAATCACTGACCAAGGCAGTGGATATACTAAAAATTACTCACGGGACAAATACACATTTTGTGAAGGAACTTTTGATGAAGTTGGAGGAAGCCCGTGCTGAAGCATCTTACAAATCTTCCTCTAAAAAATAG 1443 0.4089 MEDLQSVLVDLNLTVSSVPEKGRSLFATKDFYPGEVIISQEPYVFVPNNNSVKKRCERCFTTSFKKCARCQLVLYCGRSCQKAEWKFHRLECEALSRLDDDKRKYVTPSIRLMVKLYLRRKLQNDKIIPSTVMDNYNLVEALVSHMSDITEEQLLLYAQMANLVNVILQWPEINIKEIAENFSKFACNAHTICDSELRPLGTGLYPVISIINHSCSPNSVLVFKERTASVRAVQHVPKGSEVLISYIETAGSTMTRQKALKEQYLFKCTCPRCSKLGQYDDIQESAILEGYRCKNEKCDGFLLRTTDGNGFQCQKCGLVREKEEIKKIATETKSLSEEEASKLSSAVHCQEAISIYKTIEKLQTKLYHPFSINLMRTREKILKLLMEVEEWSEALAYCKLTIPVYQSAYPAIHPLLGLQYYTCGKLEWYLKETEEAVKSLTKAVDILKITHGTNTHFVKELLMKLEEARAEASYKSSSKK 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211454g00005 480 ProSiteProfiles SET domain profile. 11 247 IPR001214 GO:0005515
Stsc211454g00005 480 SMART set_7 11 253 IPR001214 GO:0005515
Stsc211454g00005 480 Gene3D - 105 189 - -
Stsc211454g00005 480 Coils Coil 318 338 - -
Stsc211454g00005 480 ProSitePatterns Zinc finger MYND-type signature. 56 92 IPR002893 -
Stsc211454g00005 480 Gene3D SET domain 24 273 IPR046341 -
Stsc211454g00005 480 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 15 467 - -
Stsc211454g00005 480 Pfam SET domain 22 246 IPR001214 GO:0005515
Stsc211454g00005 480 Gene3D - 55 104 - -
Stsc211454g00005 480 Coils Coil 430 450 - -
Stsc211454g00005 480 SUPERFAMILY TPR-like 350 446 IPR011990 GO:0005515
Stsc211454g00005 480 Gene3D Tetratricopeptide repeat domain 401 480 IPR011990 GO:0005515
Stsc211454g00005 480 Pfam MYND finger 56 92 IPR002893 -
Stsc211454g00005 480 ProSiteProfiles Zinc finger MYND-type profile. 56 92 IPR002893 -
Stsc211454g00005 480 SUPERFAMILY SET domain 12 246 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211454g00005 Stsc-Chr211454 27742 31574 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc211454g00005 SET 3.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211454g00005 K11426 - gmx:100789518 753.821