Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211454g00004 TCAATGCAGTCCAATTGCATAAGGCCGAAGCGCTCGGTGCTTCCCCAACGAAACTTGTCCGGAACGGCAACTGCTGCTGCTGCTGCTGCTGCCTCTACTGCTTCTGTGGATGTGAACAATCCTCTAGATGTGCCTTTGAAGGGCTTGCTTCCGCGCAGAATAAACAAAGCAACTGCTGCAGCTGAAGGTCAAAGCGACGCATCTATCACGCCTCCTTTGATTTCGGGGAATTGCAATGATACCTATGATGGCGAAGGTTTTAACTCATTCAATGCACTTGGGCAACAACATCAGGGGAAGGGTGTTAACAATGCTGGTGTGGCTTCTCTGCTTGTAGGATCTTCAAATGTGGATGGTCCGAAGAAAGTTCAGTTTTCGATCGACGCCAGCACTGGCGTGCAGGGGGCCCATGTTGCAAAGGCCACTGAGTTGGAGAACTTGTCATCTTATATGAGTTCACTTGGATTGACAGAAATGGATTGGGTTGAAGGCAGCCAACATGATCCACCAGTTGGATTTAAGCAAGATTCAAATCACCAAAGGGTAGAATGTGACATGAATTTGAGATCCGAGGGAGGAAAAAGTTCTATGTTGCCTAAGAGAACTACTGTTACTCAGGACAATCTCCAGCAGTTCAGAAACTTTTTAAGTCAGCCAGCAACTCAATCTTCAGTTGTGGGACCTTCTTGTGCTACAACTACCTCAGTCCATTCAACTTCTGCTCCCATGCTAAATTCAACAACTCGTTATTCTCATTTGCTTGTAGATAGTGGTTCGTGTGTAACGGCGGAACCTATGGGGGAGGTTAATGTTAATCATAAAGCTGTAGCTGAGGGGGTTATTGAACCTGCAAATACTTCCCAGAAAGACATTAATAGAATGTCAATTGATAAGGCAGCAATTGCTGGCCAAGCTCCCAGTTCTGCTTTTGATGCAGAGTCGGGACTTAAGGAGCACAATCAATCTAAGGAGCAACAGGGAGGCATGCTAAAAGAAAATAGTATTTCAAAATATTCTTCATGTCTTGATGATAAGTCAACTATAGCAAAGGAGCCTGCAGAGATTTCCAACCTACGATCCCAGGCTCCTGGTCCCCAAACTTCTTGTTCAGATGTGAAGTCAGAGTCTTCTAACTTAGAAAAACGAGAGAAGGGTGCAAGCAGTAAAGGTTCAACAACATCTCGCAAAAGGACCTATGACCCTGATTTGTTTTTTAAAGTCAATGGCAGGCTTTATCAGAGGCTTGGCAAGATAGGAAGCGGAGGAAGCAGCGAGGTACATAAGGTGATCTCTTCGGATTGTAAGATCTATGCACTTAAGAAGATCAAGCTCAAGGGTCGGGATTACGCTACAGCATATGGGTTTTGTCAAGAGATTGAGTATCTAAATAGGCTTAAAGGAAAGGATAACATTATACAGCTTATAGATTATGAGGTGACTGACAAAGCTTTGCTCGCGGAAGTCATGAAAGGATCCTTAAGTAATAAGGATGGGCGAGTCAAGGATGATGGATATATATACATGCAAATTCTTCTTGCTGTCAACACCATTCACGAGGAGCGTATTGTGCACTCTGATTTGAAGCCAGCCAACTTCCTGCTGGTCAAGGGTTCCCTCAAACTAATTGATTTTGGCATAGCTAAAGCAATAATGAGTGATACAACTAATATCCAACGCGAGTCACAGGTGGGAACTCTTAGTTACATGTCTCCAGAGGCATTTATGTGTAATGAGACCGATGCAAACGGAAACATAATTAAGTGTGGACGGCCGTCGGATATCTGGTCCCTGGGCTGCATACTTTATCAAATGGTATATGGAAGAACACCTTTTTCTGAATACAAGACATTTTGGGCAAAATTCAAAGTCATAACTGATCCAAACCATGAAATCACCTACGAACCAGTCCCAAACCCATGGCTTATGGATCTTATGAAGAAATGCCTCGCATGGGATCGCAATGAAAGGTGGAGAATCCCTCAGCTACTCCAACATCCTTTTCTTGTTCCTCCTGTACCAAGTCCTCCATCTTTGTCCCAAGACCAAGGCTGTAAGTTGCTTCAGCTTATTGCTGAAACTTGTAAATATGACCCTGTAGCATCCCAACTATGCCGTCAGCTCCAACAGGTCCTTGGTGATCCCCTAAATTTGGTAACTCCTAAGTCATTAGATTCACGGGATCAACAAAGACAACTGCTATCCAGAGTGTCTGAATTCTGTATTCAGCTGCAGGAACGTTTGGCAAATATGGATAACGAGTAG 2262 0.4403 SMQSNCIRPKRSVLPQRNLSGTATAAAAAAASTASVDVNNPLDVPLKGLLPRRINKATAAAEGQSDASITPPLISGNCNDTYDGEGFNSFNALGQQHQGKGVNNAGVASLLVGSSNVDGPKKVQFSIDASTGVQGAHVAKATELENLSSYMSSLGLTEMDWVEGSQHDPPVGFKQDSNHQRVECDMNLRSEGGKSSMLPKRTTVTQDNLQQFRNFLSQPATQSSVVGPSCATTTSVHSTSAPMLNSTTRYSHLLVDSGSCVTAEPMGEVNVNHKAVAEGVIEPANTSQKDINRMSIDKAAIAGQAPSSAFDAESGLKEHNQSKEQQGGMLKENSISKYSSCLDDKSTIAKEPAEISNLRSQAPGPQTSCSDVKSESSNLEKREKGASSKGSTTSRKRTYDPDLFFKVNGRLYQRLGKIGSGGSSEVHKVISSDCKIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLAEVMKGSLSNKDGRVKDDGYIYMQILLAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRESQVGTLSYMSPEAFMCNETDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEITYEPVPNPWLMDLMKKCLAWDRNERWRIPQLLQHPFLVPPVPSPPSLSQDQGCKLLQLIAETCKYDPVASQLCRQLQQVLGDPLNLVTPKSLDSRDQQRQLLSRVSEFCIQLQERLANMDNE 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211454g00004 753 CDD PKc_Mps1 410 667 IPR027084 -
Stsc211454g00004 753 FunFam serine/threonine-protein kinase mph1 isoform X2 405 492 - -
Stsc211454g00004 753 Coils Coil 740 753 - -
Stsc211454g00004 753 ProSiteProfiles Protein kinase domain profile. 412 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211454g00004 753 Gene3D Phosphorylase Kinase; domain 1 405 491 - -
Stsc211454g00004 753 Gene3D Transferase(Phosphotransferase) domain 1 500 670 - -
Stsc211454g00004 753 MobiDBLite consensus disorder prediction 375 395 - -
Stsc211454g00004 753 MobiDBLite consensus disorder prediction 359 374 - -
Stsc211454g00004 753 FunFam serine/threonine-protein kinase mph1 isoform X1 500 671 - -
Stsc211454g00004 753 ProSitePatterns Protein kinases ATP-binding region signature. 418 440 IPR017441 GO:0005524
Stsc211454g00004 753 PANTHER MIXED LINEAGE PROTEIN KINASE 148 698 - -
Stsc211454g00004 753 Pfam Protein kinase domain 412 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211454g00004 753 SMART serkin_6 412 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211454g00004 753 SUPERFAMILY Protein kinase-like (PK-like) 408 675 IPR011009 -
Stsc211454g00004 753 MobiDBLite consensus disorder prediction 305 333 - -
Stsc211454g00004 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Stsc211454g00004 753 MobiDBLite consensus disorder prediction 355 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211454g00004 Stsc-Chr211454 23449 27448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211454g00004 413 669 MAP Kinase Kinase Gene Family AT3G21220 30.682 2.73e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Stsc211454g00004 Pkinase 8.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211454g00004 K08866 - qsa:O6P43_015223 900.582