LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211453g00037	ATGGAGGCTTCATGGGAACAAAGTGTCACAAATTCTATCAACACAATCTACCTTCTCTTCTCTGCCTACCTTGTCTTTGTAATGCAAATTGGCTTTGCAATGATATCTGCTGGATCCGTACGTGCCAAGAATGCCATGAACATAATGCTAATCAATGTGGTTGATGCTGTGGTTGGTAGCATCTCATTCTACCTTTTTGGATTTGCATTTGCATATGGAGATTCAAACCCTTTCATTGGAACTAATTTGTTTGCTTTGGCCAACATTCCAAATGGCACATATGATTATAGTTTCTTCCTTTACCAATGGGCTTTTGCTATAGCTGTGGCAGGGATCACAAGTGGGTCAATTGCTGAGAGAACCCAATTTAGTGCCTATCTTGTTTTCTCATTCTTTCTTAGTGGGTTTGTGTACCCAATTGTGGCCCATTGGGTTTGGTCATCCAGTGCATGGCTAAGTGCAAGTTCAAGCGAGCCGTTCTTGGGCTCAGGAGCTATTGACTTTGCTGGGAGTGGAGTGGTCCATTTGGTTGGTGCAATTGCGGGCCTTTGGGGGTCCATCATAGAAGGCCCACGTGTCGGCCGATTTGATGCATTTGGCAAGCCGATCCCTCTTCGAGGCCACAATGCAACTCTTGTGGTAATCGGAACGTTTTTGTTGTGGTTTGGTTGGTTTGGGTTTAACCCTGGCTCGTTTGATAAGATCGTTGTTGCCTATCCTAGCACATCTGATGAAGGTAATTGGACTTCGGTGGGTCGAATTGCTGTCGTCACCACATTGGCCGGATCAACGGCTAGCATTGTCACCTTGTTCAGTCGACGGCTATTGATTGGCCATTGGGACGCAATGGATGTGTGCAATGGTTTGCTTGGTGGGTTTGTTGACATTACATCTGGATGCTCTGTTGTGGAGCCATGGGCTGCCATTATTTGTGGGTTCGTCTCGGCTTGGATCTTAATTGGGCTAAACATCTTGGCATTAAAAATGAACTATGATGACCCATTAGAGGCAGCCCAATTGCATGGTGGGTGTGGCACTTGGGGCTTATTGTTTACAGGGTTGTTTGCCAAAGAAGAATTTGTAATCCAAGCTTACAATAAAGGTGATATAGGAGTTGTAAGACCTTATGGTCTAATACTTGGAGGTGGATTTGGATTGATTGGAGCCCAAACTGTTGAGATTTTTGCAATCATTGTATGGGTTAGTGCAACAATGTGGCCCATGTTCTATGCCTTGAACAGGCTTAAATTGCTGAGAATCTCCACTGATGAGGAAGTTGCAGGCCTTGATATCTCAAGCCATGGAGGGTATGCTTATACTCATGCATATGCTTATCAAGAGGATAATTATCCTCGATCTTATGCAAATTATATGCATATTCAAGACGAACAATCATAG	1398	0.4413	MEASWEQSVTNSINTIYLLFSAYLVFVMQIGFAMISAGSVRAKNAMNIMLINVVDAVVGSISFYLFGFAFAYGDSNPFIGTNLFALANIPNGTYDYSFFLYQWAFAIAVAGITSGSIAERTQFSAYLVFSFFLSGFVYPIVAHWVWSSSAWLSASSSEPFLGSGAIDFAGSGVVHLVGAIAGLWGSIIEGPRVGRFDAFGKPIPLRGHNATLVVIGTFLLWFGWFGFNPGSFDKIVVAYPSTSDEGNWTSVGRIAVVTTLAGSTASIVTLFSRRLLIGHWDAMDVCNGLLGGFVDITSGCSVVEPWAAIICGFVSAWILIGLNILALKMNYDDPLEAAQLHGGCGTWGLLFTGLFAKEEFVIQAYNKGDIGVVRPYGLILGGGFGLIGAQTVEIFAIIVWVSATMWPMFYALNRLKLLRISTDEEVAGLDISSHGGYAYTHAYAYQEDNYPRSYANYMHIQDEQS	465

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211453g00037	465	Pfam	Ammonium Transporter Family	18	439	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Stsc211453g00037	465	FunFam	Ammonium transporter	1	455	-	-
	Stsc211453g00037	465	ProSitePatterns	Ammonium transporters signature.	167	192	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Stsc211453g00037	465	PANTHER	AMMONIUM TRANSPORTER	10	435	-	-
	Stsc211453g00037	465	NCBIfam	ammonium transporter	14	439	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Stsc211453g00037	465	SUPERFAMILY	Ammonium transporter	10	420	-	-
	Stsc211453g00037	465	Gene3D	Ammonium transporter AmtB like domains	2	454	IPR029020	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211453g00037	Stsc-Chr211453	363255	364652	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211453g00037	7	457	Inorganic Solute Cotransporters	AT1G64780	62.664	0.0	574

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211453g00037	K03320		-	qsa:O6P43_014033	773.467