Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211453g00036 ATGGGAAAGTGCGCCTTTCAGGATTCCCTGAAAGCTCTTGAAGCTGATATTCAGTGTGCTAATACTATGGCATTAAGTTATCCAAGGGAAAAAGATGGAGGATGCTATCAGATGAGACTATCATACAGTCCAGCAGCCCCCATTTTTCTATTTCTTGTTAAGTGGGCAGATTTTCGCCTTGCTGCTGCTCTTGGTCTTCTCAGAATCCTAATTTACGTGAATTGTGGAACTGGGAAGAATACCATGTCAATATATGAAAGGAAAGCAAGCATTAGGCAATTTTACACTGTGATATTCCCAGCTTTATTGCAACTCCAGAAAGGGATCACAGATTTGGAGGAAAGAAAACAGAAGGAAATTTATTTGCTTAGGTACCAAAGTAAAAGTGATTTTGAAGAGAAAGGAGACTATGAAATTGACAATGAAAGAGAAGAGGAATGTGGTGTTTGCTTGGAGGTAAAGGGGAAAGTTGTGCTGCCTAATTGCTGCCACACTATGTGTTTGAATTGCTACAGAGATTGGCGTGTGAGGTCTGAGTCTTGCCCCTTCTGTAGGGATAGCCTAAATAGAATGAACTCTGGTGACCTTTGGATTTACACAGACAAGAGTGACATTGTTGATGTTGCCACAATTTTCAGAGAGAACTCCAAGCTGCTATTTCTGTATATAGAGAAGTTGCCCCTTGTAATTCCTGACCCAAGACATGTTTCCTATGATCCATTCCTAAGGTGA 732 0.4085 MGKCAFQDSLKALEADIQCANTMALSYPREKDGGCYQMRLSYSPAAPIFLFLVKWADFRLAAALGLLRILIYVNCGTGKNTMSIYERKASIRQFYTVIFPALLQLQKGITDLEERKQKEIYLLRYQSKSDFEEKGDYEIDNEREEECGVCLEVKGKVVLPNCCHTMCLNCYRDWRVRSESCPFCRDSLNRMNSGDLWIYTDKSDIVDVATIFRENSKLLFLYIEKLPLVIPDPRHVSYDPFLR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211453g00036 243 PANTHER RING FINGER PROTEIN 41, 151 4 235 - -
Stsc211453g00036 243 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Stsc211453g00036 243 FunFam RING/U-box superfamily protein 127 194 - -
Stsc211453g00036 243 SUPERFAMILY RING/U-box 137 190 - -
Stsc211453g00036 243 SMART ring_2 147 184 IPR001841 -
Stsc211453g00036 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 194 IPR013083 -
Stsc211453g00036 243 Pfam Zinc finger, C3HC4 type (RING finger) 144 189 - -
Stsc211453g00036 243 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211453g00036 Stsc-Chr211453 358937 361348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211453g00036 60 216 C3H Transcription Factor Family AT1G04360 24.074 2.62e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211453g00036 - - gmx:100808567 403.29