Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211453g00027 ATGAAGACAACACCACCACCCTCTTATTATTACTACACACACTCTTTCTTCTTCTTCTTCTTATTAACATTCATTCTCATCATAACCGCCGCAAATGCTCTCGGCTCCGCATCCACCACCGCCGTCATCTCCGCCTCATCCACAGTCTGCGCCCTCGTTGCCGGCGAGCCCAAACAATTCATCCAGTGCTACCAACAAAACCAGCAAAAGAACAATTATTATTATTCTTATGGAGATGTTGCACCGCCGGTGGTTGAGGTGCTTCCACACGCCTCCTTTGAGTCCATCTCCGGTGATCAGAGATTCTTCTGCGGGCTCCGGTCCGGTGGCCTCAGCCTCCTCTGCTGGGACGCGGATGAGGGAGCATCGGTGCTCGTGCCGAAGAGGATCTACCACAGTGACGTGGTGCAGTTAACCGATCTAACTGTTGGTGATTCTCAGGTTTGTGCTAGAGAGTCTCAATCTGGTGTGGTGAGGTGTTGGAGAGGAGGCAGTGTTGAAAATGGATTCAAGTTTCATTCGCCTGGCAATGACCTCAGGTTCAAAAGCATCACTTCAGGGTTTGGTTTCTCTTGTGGGGTGTTAATGAATAATGGAAAGGTTCATTGTTGGGGTAACAACAATGGTAGTGAAATTCAAGCACAATTTGGGAACATTTCTATGTCAAATTTGGTTGCTGGGGTTTCACATGTTTGTGGCTTAACAATTTATGATGGGCTCTTAATTTGCAAAGGGAACAATGATTCAGGCCAATTGGGTCCTAACAATTTAAATTCAAGTTCTTATTATCAAGAGTTTTCAGGACTTGCATTGGGAGAAGATTTCACTTGTGCTATTAGAAGAAGAAATGGACTTGTCCAATGTTGGGGTGGTGAAGATGCCAAAAAGTTTGATTCTTTTAATGATGTTTCTTTTGAGTCAATTGTTGCAGGATTGGATTTTGTTTGTGGGGTAACAACCATGAATCTGTCTCTGATTTGTTGGGGTCCTGGTTGGTCTAATAATAATGGTAGTAGTGCTATTAATTATGAGATTCCATTGGGAATGGTTCTTCCTAGTCCATGTGTTAGAGGAGGTTGTGATTCTTCTTGTGCTTCATACCCAAATTCTGATTATTTGTGTCATGGTTCTGGAACTATTTGCTATTCATGCCAGGACAATCAAATTCCACTAGCTGTGCCATTGATTCCACCACCATCACCATCATCATCATCAACACAAGCTTCTAATTTACACTACAAAAACATGAGGGTGATTTTGGTAATTTCGATTGTTGGATCAGTTGGTGCTTTTGCTGGTTTATGCACTATTCTTTATTTCCTTTGGGTTGGAGCCAAAAGAGTACTCTTCAAGAAGAAAAATGTTGATAATTTAGAGCAACCTCGGAGAAATGATGATTCTGATGGTGATGGCTATGTTGATTTAGCTCCAATGCCGCCGAATCGGACATCGAATGCAACATCACTAGGATCATTGAGGAGATATAGGAGTGTTGGTAGTTCATCATCGAAGCACAATTTAGATAAAATTGAGAATTTTTCATTAAATGAGTTAGTTATAGCCACTAACTATTTTTCAAATGATAACAAGATAGGTTCTGGAAGCTTCGGCTCTGTATACAAAGGGAAGCTGGCTGATAATCGAGAAGTTGCTATCAAAAGAGGAGAAATTGTTAGCACTAGAAAGAAGAAGAAGTTTCAAGAAAAAGAGACTGCATTTGATTCCGAGCTGTCATTGTTATCAAGGCTTCACCACAAGCATCTTGTGAGGCTAATTGGCTTCTGTGAGGAGAATGAAGAGAGGCTCTTGGTTTATGAGTACATGAGCAATGGATCAATCCATGAGCACTTACATAACAAGAACAATAATGTTGAGAAAAGTAGTAGCATTTTTAATTCTTGGAAGATGAGGATCAAAATTGCATTGGATGCTGCTAGAGGAATTGAGTACATTCACAACTATGCTGTTCCACCAATTATCCATAGAGATATCAAATCCTCAAATATACTATTGGATTTAAATTGGAATGCTAGAGTTTCCGATTTCGGATTGTCACTCATTTGGCCGGAGATAGAACAAGATTCTATACTTATAAGAGCAGTCGGCACCGTTGGTTACATAGATCCAGAATACTATGAATTGAATGTGTTAACAACAAAAAGTGATGTGTATGGTTTAGGAGTGGTTATGTTGGAGCTTCTAACAGGAAAAAGAGCTGTATTTAAATTAGATCAAGAAAATAATAGCAAGTCTAATGGTCCTATGGGAATAGTAGAATATGCAAGACCAAGAATAGCAAAAGGGGAATTGTGGAGTATTTTGGACTGTAGAGTTGGAAAACCTAATGTCAATGAGGTTGAAGCTCTTAAGGTTATGGGTTTTATTGCTATGCATTGTGTGAGTTTAAAGGGAAAAGAAAGGCCTGAAATGACTGAAATTGTTGCCAATTTAGAAAGGGCATTGAGTTTTTTGGAGGGTAGTTCTAATAATACTAGCCCTTCTATTGCTTCATGTTCCAATACATTTGTATTGTAA 2535 0.4004 MKTTPPPSYYYYTHSFFFFFLLTFILIITAANALGSASTTAVISASSTVCALVAGEPKQFIQCYQQNQQKNNYYYSYGDVAPPVVEVLPHASFESISGDQRFFCGLRSGGLSLLCWDADEGASVLVPKRIYHSDVVQLTDLTVGDSQVCARESQSGVVRCWRGGSVENGFKFHSPGNDLRFKSITSGFGFSCGVLMNNGKVHCWGNNNGSEIQAQFGNISMSNLVAGVSHVCGLTIYDGLLICKGNNDSGQLGPNNLNSSSYYQEFSGLALGEDFTCAIRRRNGLVQCWGGEDAKKFDSFNDVSFESIVAGLDFVCGVTTMNLSLICWGPGWSNNNGSSAINYEIPLGMVLPSPCVRGGCDSSCASYPNSDYLCHGSGTICYSCQDNQIPLAVPLIPPPSPSSSSTQASNLHYKNMRVILVISIVGSVGAFAGLCTILYFLWVGAKRVLFKKKNVDNLEQPRRNDDSDGDGYVDLAPMPPNRTSNATSLGSLRRYRSVGSSSSKHNLDKIENFSLNELVIATNYFSNDNKIGSGSFGSVYKGKLADNREVAIKRGEIVSTRKKKKFQEKETAFDSELSLLSRLHHKHLVRLIGFCEENEERLLVYEYMSNGSIHEHLHNKNNNVEKSSSIFNSWKMRIKIALDAARGIEYIHNYAVPPIIHRDIKSSNILLDLNWNARVSDFGLSLIWPEIEQDSILIRAVGTVGYIDPEYYELNVLTTKSDVYGLGVVMLELLTGKRAVFKLDQENNSKSNGPMGIVEYARPRIAKGELWSILDCRVGKPNVNEVEALKVMGFIAMHCVSLKGKERPEMTEIVANLERALSFLEGSSNNTSPSIASCSNTFVL 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211453g00027 844 CDD STKc_IRAK 531 819 - -
Stsc211453g00027 844 Pfam Regulator of chromosome condensation (RCC1) repeat 182 208 - -
Stsc211453g00027 844 Gene3D - 30 216 IPR009091 -
Stsc211453g00027 844 FunFam Somatic embryogenesis receptor kinase 1 495 607 - -
Stsc211453g00027 844 SMART serkin_6 525 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211453g00027 844 Pfam Protein kinase domain 526 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211453g00027 844 ProSiteProfiles Protein kinase domain profile. 525 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211453g00027 844 ProSitePatterns Protein kinases ATP-binding region signature. 531 553 IPR017441 GO:0005524
Stsc211453g00027 844 Gene3D - 217 354 IPR009091 -
Stsc211453g00027 844 Gene3D Phosphorylase Kinase; domain 1 497 607 - -
Stsc211453g00027 844 Gene3D Transferase(Phosphotransferase) domain 1 608 834 - -
Stsc211453g00027 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 659 671 IPR008271 GO:0004672|GO:0006468
Stsc211453g00027 844 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 218 828 IPR044815 GO:0004674
Stsc211453g00027 844 SUPERFAMILY Protein kinase-like (PK-like) 502 817 IPR011009 -
Stsc211453g00027 844 MobiDBLite consensus disorder prediction 459 490 - -
Stsc211453g00027 844 SUPERFAMILY RCC1/BLIP-II 74 292 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211453g00027 Stsc-Chr211453 256924 261442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211453g00027 13 837 Receptor kinase-like Gene Family AT3G55950 49.115 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Stsc211453g00027 Pkinase 9.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211453g00027 - - ahf:112792254 1275.77