Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211453g00018 ATGTCTGCATTGCTTGAGTTTTCAGCCTCAGATGATGTAAACGGGTTCAAGGATGCTATTGAGAAAGAGGGTCATGATGTTGGTGAGGTTGGACTATGGTATGGTAGGAGAATTGGAACAAAGGAACTTGGTTACGAAGAGAGAACCCCTCTTATGATTGCTGCAATGTTTGGGAGCAAGAATGTCTTGTCTTACATTCTCAAAACAGGCAAAGCTGATGTCAACAAATCTTGCGGCTCCGATTCAGCCACCGCCCTCCACTGCGCCGTCGACGGAGCCTCCCCAGCCTCCGCCCACGTTATCAAGCTCTTGCTGGATTCTTCCGCCAATGTGAACGCCCTCGACGCAAGGGGAAACCGGTCCCACGACTTGGCTCTCTCTATGCCCCACATCTACAACGCCCGAAAGAAGGCCGTACAATCGGTTCTAGAAGGCGCGAACAATGTTTATAAAAAGGAGGCAATGGCAACGGCAACAACAACGACCACAACGGGAGCAGCAACAGAAAGAACAACAAAGGCAGAGTTTCCTCTGTCTCCGCGGTATAAAGAGTTTCCATTTGACTACTCTTTGCCGGACATAAAGAACGGGATATACAGCACGGACGAATTTAGAATGTATACCTTCAAAGTGAAGCCATGTTCAAGGGCGTATTCACACGATTGGACAGAGTGTCCTTTCGCGCATCCGGGGGAGAATGCGAAAAGGAGGGACCCACGGAAGTACCAGTACAGCTGCGTCCCTTGCCCGGAGTTTCGCAAAGGAAGCTGCAGCAAAGGAGATTCCTGCGAGTACGCGCATGGAATCTTCGAGTGCTGGCTTCACCCAGCGCAATACCGGACAAGGCTCTGCAAGGACGAGATGGCTTGTACAAGAAGAGTTTGTTTCTTCGCTCACAAGCCAGAAGAGCTTCGCCCGCTTTACGCCTGTTCCGGCTCCGCATTGCCTTCCCCGACTTCTTATTCGCCAGGTGCCGCTCCCTCATTGGACATTTGCTCATCCCCGCCGTCCGCCGCTGCTGTCGCTGTCGCTGCCGCTGGATCTTCTCCGGTATGGCCAACCACTCAAACTAATAAGCTTCCGAAAAGCAGGCTAAACCTCGCGCTCAGCGCGAGAGATGTTAATCTTGACATCCAGTCGATCGGACTGGAAAGCCGGCGACTGATGCAGAAGATAATGATGGAAGAGATGGCGTCAGCATTATCGCCAAACTCTTCAAGCTGGATTAACTCTTTGCCGACGAGTCCGTCTTTCGGTTCTCCGGTGCCTTCTCCAACAAGTATTTGGAGTAACTCCTCCAACTATTCTCCTTCACCTTCAAAAGTCATTGGATCGGCTACATATGGCCTGGATCTCTCCGGTGCCGCCGCCGCCTCAAGAAACAGTGATTTCTCCATCCGGAGTCCGACAGAACTTCCTTCCCCTTCTATGGAGTCGTCGTCGTCTTCTACCTTGTTTGGTTGGGGTTCCCCTGACGGGAAATTAGACTGGTCCATTCGCAGAGACGAATTGAAGAAGATGAACAAGTCTGGTTCTTTCGCCTTCCGAAGCAGTGCTAATCCTGTTACGACTCCGGAGCTGGCGGACGAGGATGGTATTGATGGTGAACCAGATGTGTCTTGGATTCCGACAGGTATGCTCTCACTCGAACCCTTCAAAAGAAGTCGTGGTTCATAA 1677 0.514 MSALLEFSASDDVNGFKDAIEKEGHDVGEVGLWYGRRIGTKELGYEERTPLMIAAMFGSKNVLSYILKTGKADVNKSCGSDSATALHCAVDGASPASAHVIKLLLDSSANVNALDARGNRSHDLALSMPHIYNARKKAVQSVLEGANNVYKKEAMATATTTTTTGAATERTTKAEFPLSPRYKEFPFDYSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFAHPGENAKRRDPRKYQYSCVPCPEFRKGSCSKGDSCEYAHGIFECWLHPAQYRTRLCKDEMACTRRVCFFAHKPEELRPLYACSGSALPSPTSYSPGAAPSLDICSSPPSAAAVAVAAAGSSPVWPTTQTNKLPKSRLNLALSARDVNLDIQSIGLESRRLMQKIMMEEMASALSPNSSSWINSLPTSPSFGSPVPSPTSIWSNSSNYSPSPSKVIGSATYGLDLSGAAAASRNSDFSIRSPTELPSPSMESSSSSTLFGWGSPDGKLDWSIRRDELKKMNKSGSFAFRSSANPVTTPELADEDGIDGEPDVSWIPTGMLSLEPFKRSRGS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211453g00018 558 ProSiteProfiles Zinc finger C3H1-type profile. 243 270 IPR000571 GO:0046872
Stsc211453g00018 558 ProSiteProfiles Ankyrin repeat profile. 81 116 IPR002110 GO:0005515
Stsc211453g00018 558 FunFam Zinc finger CCCH domain-containing protein 66 201 269 - -
Stsc211453g00018 558 MobiDBLite consensus disorder prediction 465 485 - -
Stsc211453g00018 558 SUPERFAMILY Ankyrin repeat 34 131 IPR036770 -
Stsc211453g00018 558 PANTHER UNKEMPT FAMILY MEMBER 6 542 IPR045234 -
Stsc211453g00018 558 SMART c3hfinal6 243 269 IPR000571 GO:0046872
Stsc211453g00018 558 SMART c3hfinal6 278 301 IPR000571 GO:0046872
Stsc211453g00018 558 Pfam CCCH-type zinc finger 248 268 IPR041367 -
Stsc211453g00018 558 Pfam Ankyrin repeats (3 copies) 39 114 IPR002110 GO:0005515
Stsc211453g00018 558 ProSiteProfiles Ankyrin repeat region circular profile. 81 115 - -
Stsc211453g00018 558 Gene3D - 2 153 IPR036770 -
Stsc211453g00018 558 SMART ANK_2a 81 113 IPR002110 GO:0005515
Stsc211453g00018 558 SMART ANK_2a 46 76 IPR002110 GO:0005515
Stsc211453g00018 558 Gene3D - 244 306 - -
Stsc211453g00018 558 MobiDBLite consensus disorder prediction 510 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211453g00018 Stsc-Chr211453 198939 200982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211453g00018 1 541 C2H2 Transcription Factor Family AT5G12850 39.905 2.17e-125 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc211453g00018 Ank_2 3e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211453g00018 - - aip:107616248 835.099