Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211452g00056 ATGAAGAAGAGAGTGGTCACAATACCGATCGGTGACGTGGACGGATCTAAGACCAAAGGAGAATCATATCCACCGTCCGATTCATGGGCCTGGAGGAAGTACGGCCAGAAGCCCATCAAAGGCTCACCTTACCCAAGGGGATATTACCGATGCAGCAGCTCAAAAGGGTGCCCCGCGAGGAAGCAAGTTGAACGAAGCCGCGTGGACCCCACCAAGCTCATGATCACCTACAACTACGATCACAACCACTCTCTTCCGCTAACCAAATCCCACTCATCCTCCTCTTCCTCTTCCTCCGCCACCGTTACCGCCACCACTACCACCGTCACCGAAGTCGCTGTCGCCTCCTCTCCCTCTGACTCCGCCGCTGGCTTCCCGCCGGAAGATCTGACGGTATTCTCCAGCCACGTCGATCTCGACCTCGCCGGCGACTCCGCAGTACTTCTCTGCCACCATAACCACCACGGATTCGGGTGGTTCGACGACGTAGCCTCTGCCGGCGTCTTGGAGAGTCCGATCTGCGGAGGCATGGATGACATGGCGCTTACGGCGGAGGAGGATGACGAGGAAGAATCGCTGTTTGCCGGACTCGGCGAGCTGCCAGAGTGCTCGGCTGTTTTCCGGCGGAGGAATATTCCCCGTGCCAGCGCGATCCAGTGCGGTGGCATCACAGGATAA 678 0.5841 MKKRVVTIPIGDVDGSKTKGESYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLMITYNYDHNHSLPLTKSHSSSSSSSSATVTATTTTVTEVAVASSPSDSAAGFPPEDLTVFSSHVDLDLAGDSAVLLCHHNHHGFGWFDDVASAGVLESPICGGMDDMALTAEEDDEEESLFAGLGELPECSAVFRRRNIPRASAIQCGGITG 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211452g00056 225 Gene3D WRKY domain 12 87 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211452g00056 225 SUPERFAMILY WRKY DNA-binding domain 21 86 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211452g00056 225 FunFam WRKY transcription factor 65 12 86 - -
Stsc211452g00056 225 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 2 205 IPR044810 GO:0003700
Stsc211452g00056 225 MobiDBLite consensus disorder prediction 1 27 - -
Stsc211452g00056 225 SMART WRKY_cls 25 85 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211452g00056 225 ProSiteProfiles WRKY domain profile. 26 86 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211452g00056 225 Pfam WRKY DNA -binding domain 27 83 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211452g00056 Stsc-Chr211452 397683 400311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211452g00056 1 212 WRKY Transcription Factor Family AT3G58710 50.228 1.10e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc211452g00056 WRKY 3.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211452g00056 - - ahf:112707218 390.578