Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211452g00049 ATGGGGTCAAAATATCCAAGCGAGACGGCGAGGTTTTGGAGAACCAAGTTTAAGGCCCTACTCTGTTGCTTGCAGTCTCCTTCTCCCATTGATTACAAGCTGCAAGATTCAGCTTGCAGTTCCACTCATCACCCAACGGATCCCAGCAGTTTCAGGCGGGTATACAAGCACGATGTGTTTCTAAGTTTCAGAGGCACCGACACTCGCAACAATTTCACAGATCATCTCTATCATAATCTCATCAGGAAAGGCGTTTTCGCCTTCAAGGACAACGAGAGGCTTCAGAAAGGGGAACCTATTTCTTCCCAGCTTCTGCAAGCCATCAAAGATTCCCGCGTTTCTATAATTGTCTTCTCAAGGGATTATGCTTCCTCCACATGGTGCCTTGATGAAATGGCTACCATTGCTCAATGCAAGAAAGAGTTCGGACAGAAGGTTTTCTCCGTTTTCTTTGATGTGGATCCTTCTGATGTTCGAAAGCAGAGTGGGGTGTACAAGGATGCTTTTGCTTTGCATACAGAAAGGTTTCAACAAGATCCTGGCAAGGTTGAACGCTGGAAGAGAGCTATGACGGGTTTGGCCAACTCTGCTGGATGGGATGTTAGAGATAAGCCAGAATTCACAGAGATTGATAAAATCATTCAGAAGGTAATAAAAAAATTAGATCATAGATTTTCTGGGTCTGCTGATGATCTAGTAGGGATTCAACCATGTGTAAAAGAATTAGAACAAGTTCTAAAGATAAACCCAAAGGATGAAGATGTTCGAGTTCTTGGAATATGGGGAATGGGTGGAATAGGAAAGACAACTCTTGCAAGTGTCTTGTATGACAAAATCTCTTATATGTTTGACGCACATTGCTTTATCGAGGATGTGAGCAGAAGTTATAGAGATGGCAGTGCTATTGCCATTCAAAGACAAATTCTTCGTCGAACTCTAGAGGAACAAGATCTGGATAAATATAGTCCTTCTGAAATAGCTGGCATAATCAGAAATAGGCTATCTTCCAAAGAAGTCCTCATAGTTCTTGATAATGTTGATGAAATCGAACAATTAGAGCAATTGGCTATTAATCCTAAATTACTTGGAAGAGGAAGCAGGATGATCATAACCACTAGGGATGAACATATTCTTAAAAGCTATGGAGTAGATGCAATTCACAAGGTTTCGTTATTGAATTCCAGTGATGCTTTGGAACTTTTTGCCAGAAAGGCCTTAAAAAGTGACTGTCCTAGTAGCAGCACTTGTATGAAGTTGACTCCTATCATATTGGAATATGCTCAAGGTCTTCCATTAGCAATCAAAGTAGTGGGTTCTTCCTTGTATAATAGGAATGCTTCCCAATGGAGAGATTATTTAGAAAGATTGAAGAAATATCCGGACAAAAGAGTTACAAATGTTCTTCAAACAAGTTTTGATGCATTGGAAAACGAAGACAAAGAAATATTTTTGCACATTGCTTGTTTTTTCAGAGGGGAGAGGGAAGAGTATGTAAAGCGAATTTTAGATGTTTGTGGACTACACCCTCACATTGGAATTCAAGTTCTCAAGGAGAGATCACTCATAACCATTAAGAACCAAGAGTTTCATATGCATGACATGTTACAAGAATTGGGAAAGAAACTTGTTCGAGAAAGATATCCTGAAGAGCCAGCGTTTTGGAGCAGATTGTGGCTCTATAGTGATTTTGAAAGTGCTTTGATGTCAGCTGAGACGGGAACAAACAACGTTAAAGCCATAGTCTTGGATCAGAAAAAGGAGATGTCCGAGTGCAGACAGTTGAGGATTGATGGATTGTCTAAATTGAGGGATCTTAAACTGCTTATATTATACCACAAAAACTTTTCAGGAAGCCTTGATTTTCTTTCTCCAAATCTACAATACCTTGCTTGGCATGGCTATCCTTTCCCTTCTTTGCCATCGTTTCAACCATATAGTAGGCTTGTTGAACTGAACCTGCCTTATAGCAATGTCAAACGACTATGGGAAGGCAATAAGAATATCCCACACTTGGAAAAGGTGGACTTGAGCTACTCAAAGGATCTCATAGAGACGCCAAGTTTTGAATGGAACCCAAATCTTAAGCGACTAGATTTTACAGGATGCACAAATCTAACGCACGTCCACCCTTCAATTGGACTTCTTAAGCAGCTTGCATACTTGAGTTTGGAAAACTGTAGCAGTTTGTTGAGCCTCAATCTTGGAGATGGTTGTAATTTAAGTTCTCTTAGAGTTCTATGCCTTTCTGGCTGCACAAACCTTAAGAAGAGCCCAGATTTCACAGGGCTTTCAAATCTTGAGTATCTAGATCTTGAAAACTGTACAAGTTTACCCACAGTTCATGAATCTATCGGTTCTCTTGCAATGTTAAAGTTCTTGAGTTTGAGAGGCTGTATTATTATTTATATGCCCATGGAAGTCAACAATATGATATCTCTTCAAACCCTAGATTTAAGCCGCTGTCTGCGACTGAGGTATCCCCTTGGACAGATTTCTATGTCTTCCTCTTACCTAGAATCTTTGATATGTCTGGACCTTGGCACATGCCATTTTATAGAAAATATTCCTGATTCTATTGGAGAGTTGAGCTGTTTAGAAAGATTAAACTTGGAGGAAAGTCAGTGTAGTCATTTACCTGATACCATCAAGCAGCTTTCCAGACTGGCATATTTGAATTTGGGAGATTGCTTATATCTTGAAAGATTGCCTGAGCTCCCATTTGATAGTGCGCCATCAGGGGGAAGGTATTTTCAAACGGTATCCGCATCTCGTAACCATAGATCAGGATTGTATGTTATAACCTACAATAAGGTTATGAAGAAAAACTTTAATTATATGCCGGCTGCACTCTCATGGTTTGCTAGACTTGTTGAGCAACCCTGTCATTTTCGATCTGGGTTTGACATCATAATTCCTCAAAATAAGAGTAGTGGAATCCCAGTATGGTATTTCAATCATCAGTTTAAAGGTGGGTCAGCTGTAAGGGTAGTGGACTACGATGATGCAGATGACAACTGGCTTGGCTTTTCATTTTGTGTTACGTTTGACCATGTTACATGTGATTCATCTTCTGATGATCCACGATGTCCTTATCTTTCTTTTGAAAGTGAGCACACCGAAGAATATTTTGATATGTGGTCTTCTTTGCTCTTATCCTTTCCTTATAACCAGAAGAGGACATACTATCATTCTTTTCATATGACGCATGCTTGGATAATCTATATCTCTCGGGTGCATTGCCATTTTGTGAAAACAGGAGCCCGTATAAGATTTAAAGGCTGCAAAGGATTGAAGTTGCATCAATGGGGCTTACGCATGGTCTTCAAACAAGATATAGAGGAACTGAAGAGGTGGTCACAAAGTAAGGATAATAGAACAAACACTCCTGGCTTTCATTCTTCTAGATTGGTCGTTGATGAGTATGTGCATCAAGCTGGAAGTAGTAGCTCGGAGTCGGAGACCAAAATCAAGCTTCCTTATAATTGGTTGGTTTCTGACGAAGATGAAAATGAGAAGATGGAGGCAAAGGCCAAAGAAGATAATCTCTCTAATTTGGGCCTTGTGTAG 3567 0.4003 MGSKYPSETARFWRTKFKALLCCLQSPSPIDYKLQDSACSSTHHPTDPSSFRRVYKHDVFLSFRGTDTRNNFTDHLYHNLIRKGVFAFKDNERLQKGEPISSQLLQAIKDSRVSIIVFSRDYASSTWCLDEMATIAQCKKEFGQKVFSVFFDVDPSDVRKQSGVYKDAFALHTERFQQDPGKVERWKRAMTGLANSAGWDVRDKPEFTEIDKIIQKVIKKLDHRFSGSADDLVGIQPCVKELEQVLKINPKDEDVRVLGIWGMGGIGKTTLASVLYDKISYMFDAHCFIEDVSRSYRDGSAIAIQRQILRRTLEEQDLDKYSPSEIAGIIRNRLSSKEVLIVLDNVDEIEQLEQLAINPKLLGRGSRMIITTRDEHILKSYGVDAIHKVSLLNSSDALELFARKALKSDCPSSSTCMKLTPIILEYAQGLPLAIKVVGSSLYNRNASQWRDYLERLKKYPDKRVTNVLQTSFDALENEDKEIFLHIACFFRGEREEYVKRILDVCGLHPHIGIQVLKERSLITIKNQEFHMHDMLQELGKKLVRERYPEEPAFWSRLWLYSDFESALMSAETGTNNVKAIVLDQKKEMSECRQLRIDGLSKLRDLKLLILYHKNFSGSLDFLSPNLQYLAWHGYPFPSLPSFQPYSRLVELNLPYSNVKRLWEGNKNIPHLEKVDLSYSKDLIETPSFEWNPNLKRLDFTGCTNLTHVHPSIGLLKQLAYLSLENCSSLLSLNLGDGCNLSSLRVLCLSGCTNLKKSPDFTGLSNLEYLDLENCTSLPTVHESIGSLAMLKFLSLRGCIIIYMPMEVNNMISLQTLDLSRCLRLRYPLGQISMSSSYLESLICLDLGTCHFIENIPDSIGELSCLERLNLEESQCSHLPDTIKQLSRLAYLNLGDCLYLERLPELPFDSAPSGGRYFQTVSASRNHRSGLYVITYNKVMKKNFNYMPAALSWFARLVEQPCHFRSGFDIIIPQNKSSGIPVWYFNHQFKGGSAVRVVDYDDADDNWLGFSFCVTFDHVTCDSSSDDPRCPYLSFESEHTEEYFDMWSSLLLSFPYNQKRTYYHSFHMTHAWIIYISRVHCHFVKTGARIRFKGCKGLKLHQWGLRMVFKQDIEELKRWSQSKDNRTNTPGFHSSRLVVDEYVHQAGSSSSESETKIKLPYNWLVSDEDENEKMEAKAKEDNLSNLGLV 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211452g00049 1188 SUPERFAMILY Toll/Interleukin receptor TIR domain 49 199 IPR035897 -
Stsc211452g00049 1188 SMART till_3 56 196 IPR000157 GO:0007165
Stsc211452g00049 1188 Gene3D - 391 476 IPR042197 -
Stsc211452g00049 1188 ProSiteProfiles TIR domain profile. 55 221 IPR000157 GO:0007165
Stsc211452g00049 1188 Pfam TIR domain 56 225 IPR000157 GO:0007165
Stsc211452g00049 1188 Pfam NB-ARC domain 243 465 IPR002182 GO:0043531
Stsc211452g00049 1188 Gene3D Ribonuclease Inhibitor 569 926 IPR032675 -
Stsc211452g00049 1188 SUPERFAMILY L domain-like 531 926 - -
Stsc211452g00049 1188 FunFam Disease resistance protein (TIR-NBS-LRR class) 53 223 - -
Stsc211452g00049 1188 Gene3D - 31 193 IPR035897 -
Stsc211452g00049 1188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 486 IPR027417 -
Stsc211452g00049 1188 Gene3D - 210 386 IPR027417 -
Stsc211452g00049 1188 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 756 IPR044974 GO:0006952
Stsc211452g00049 1188 PRINTS Disease resistance protein signature 257 272 - -
Stsc211452g00049 1188 PRINTS Disease resistance protein signature 427 441 - -
Stsc211452g00049 1188 PRINTS Disease resistance protein signature 761 777 - -
Stsc211452g00049 1188 PRINTS Disease resistance protein signature 333 347 - -
Stsc211452g00049 1188 Pfam Leucine Rich Repeat 648 666 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211452g00049 Stsc-Chr211452 331647 383331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211452g00049 739 904 WRKY Transcription Factor Family AT4G12020 35.119 1.19e-13 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211452g00049 - - adu:107462392 1207.97