Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211452g00047 ATGGAAGCTATACTTGGTTTTATCAAACTTAGGATTAAGAGAGGCATTAATCTCGCAAAACGCGATACTTTTTCAAGCGACCCTTATGTTGTTGTCAAAATGGATGAACAGAAGCTGAAAACTGCTTTCGTACGTAAAGATATTAATCCAGTATGGAATGAAGAACTGACTCTTTATGTTAGGGATGTTGCAACTCCAATATATCTGCAAGTTTTCGACAAAGACACGTTCACAGCAGACGATGAAATGGGGGATGCAGTGATAGACTTAAGGCCGTACATTGAGTGCCATTTGATGGGTTTGGAGAGTCTTCCAGATGGATGTGTTGTGAAGAGGATTCAACCAGATCGGATTAACTGTCTTGCTGATGAGAGCACTTGCTTTTGGAGGGATGGCAATATAATCCAACACATGATTCTAAGATTGAAAAATGTTGAGTGTGGTGAAATTGAATGTGAAATTGAGTGGCGTGATATTCCTGGCTGTAATGGTTTGGCTGGACTAAATTATGAATCAAATTATGAAATAATCAAGATTACTTTTTGTGTATATGATGTGCATTTTGTTTGGAAATAA 576 0.3767 MEAILGFIKLRIKRGINLAKRDTFSSDPYVVVKMDEQKLKTAFVRKDINPVWNEELTLYVRDVATPIYLQVFDKDTFTADDEMGDAVIDLRPYIECHLMGLESLPDGCVVKRIQPDRINCLADESTCFWRDGNIIQHMILRLKNVECGEIECEIEWRDIPGCNGLAGLNYESNYEIIKITFCVYDVHFVWK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211452g00047 191 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 162 IPR044562 -
Stsc211452g00047 191 Pfam C2 domain 8 92 IPR000008 -
Stsc211452g00047 191 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 157 IPR035892 -
Stsc211452g00047 191 Gene3D C2 domain 5 161 IPR035892 -
Stsc211452g00047 191 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Stsc211452g00047 191 SMART C2_3c 7 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211452g00047 Stsc-Chr211452 303892 304643 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211452g00047 38 166 C2H2 Transcription Factor Family AT1G70790 59.542 5.68e-55 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211452g00047 - - qsa:O6P43_032566 237.269