Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211452g00042 ATGGAGTCATCATCGGCAATCAACAGTAGTTCTTGTAATGTTCCTCAAATGACCATGAACGGTGATGAAGTGATCAACAACCATGCGGGGATTGATTATTATCAACAACAGGTTTATCAGAACATGAATGTAACTGAACCGCCAACAATACAATCAAATCCTCCTCCTCCTAATCAAGAACCAGATCCAATTTTCCCGATCAGTTCCATGGACAACAACAACATTTTCGGCAATGGCGGATTCAACCGAGCAAGTGATAACCTTCATTATTATTCTCCAGCAAATGCTCCTCCACATCAAGAACCAGATCCAGGTTTCCCGAACGTTGGAGGCATGAATAGCAAAATTTCCGGTGGATTCAACCGAGCAAGTGACCTTCTGTTGGTGGTATCAATGTACTCAGAGCCAACAAAGTCAGAGATCATAGCCCTTGCCGAGTCAGCCATGAATGAATTGTCGAAAATAGCCCTGGAAGGGCAGCCTCTGTGGGTTCCGCAGAAGGACAAGAAGTTTGAAACGATTAACGATATGGAGTACTTGAGGCAGTTCGGTGAGGTTCGCGAAATTGAATCGCTCAGGGAGATTATGAAGCTTGTTGAGGTTGGAAATGGCTCTTCTTCTTCTCAGTACTTGTTGCCAACCGTTGATTCCTTTCGGAGGGAGCTTGTTCCGTTATCTCTCAGTGGTGTTCCCAAAGAAGCTCTTCAAACTGAAGCTTCACGCGATATGGCTTACCTTGAGATCAGTTCCACCAAGCTTCTTCACTCGCTCATGGATGTGAAGGAATGGTCGAAAGCATTTGATAATATTGTGGCTAGGGCAGCGGTTCTAGGAACCTTGTCAAATGGAGCCGAAGAAAGCTACGCTGGGAAAGTGCAAGTGATGTACGCAGAATATCATTTGCCTACGCCATTTGTGCCATCAAGGGAGTGCTATTTTGCAAGGTACTGCAAGCAGTTGCCTTATGAAATGTGGGGTGTTGTTGACGTGTCTCTTGAGAAGCATTTTCCTTCTCTAGCAACCAATTTCCGAAGGAGACCCTCAGGCTGCTTGATTAAGCCAATGCCAGATGGATTCTCTAAGATAATATGGGTGGAGCATGTGGAAGCAGACCATAGCCAACTGAGCAACCATTTCCGGCCACTAGTCACAACGGGTTTGGCTTTTGGTGCAACTCGTTGGATTAATTCTATAGTTAGGCTCATTGATTCGTCTCAAATTATGGAGGCTACAACAGCTCCAATTTATGTTGATCATGGGGTTATGATACCACAAGCTGGGAGGAAAAGTTTCCTAAACCTGGCAGACAGATTAGTGAGAAGCTTTTGTGGTGATATCAATGCTTCAATGGGGAATCAATGGATGCCATTAATATCTTCAGAATCTGATTCTTTAGATGTGAGGGTGATGATCAAGAATAACATTGAGGATCCTGGGAAACCTATTGCCACAACTGTGGTTTTTAGCACTTGTCTTTGGTTTAAAGTCTCACCATCAAACTTGTTCAATTTCTTGCGTCATGAAGATTCCAGAAACAAGTGGGATTTACTTTCACATAAACTTACAATTCGAGAATTCGCATATATGAACAAAGGCATAAATCCAGGGAATCGTGTTTCCTTGATGAGAGCAATGAATTCTCAAGACAAGATTGAAATCTTTTACATCCAAGAAAGCTACACAGACACAACAGGGTCCCATATTGTTTATGCGCCACTAGACGAATTTGCTTTGTCGGCTCTTGCAAATGGAGCAAACCCTAACAAGATAATGGTCCTTCCATCAGGGTTTTCAATCCTTCCTTGTGGGTTCCCTAGTGATTATTATGGTGAAGATGGTGGAAGCGGATGCATTCTGACTATTGCCTTTCATATAATTGAGAGCCATAATGTCAGGCTATATATTCCTCCTGAATCAGTTATGACCATGAAAAAGATTATTTCAGAGACCGTCACCAATATTAAAGATGCAGTGATGTATAATAATCACACAAACAACTGGCATTACAATTGA 2013 0.4262 MESSSAINSSSCNVPQMTMNGDEVINNHAGIDYYQQQVYQNMNVTEPPTIQSNPPPPNQEPDPIFPISSMDNNNIFGNGGFNRASDNLHYYSPANAPPHQEPDPGFPNVGGMNSKISGGFNRASDLLLVVSMYSEPTKSEIIALAESAMNELSKIALEGQPLWVPQKDKKFETINDMEYLRQFGEVREIESLREIMKLVEVGNGSSSSQYLLPTVDSFRRELVPLSLSGVPKEALQTEASRDMAYLEISSTKLLHSLMDVKEWSKAFDNIVARAAVLGTLSNGAEESYAGKVQVMYAEYHLPTPFVPSRECYFARYCKQLPYEMWGVVDVSLEKHFPSLATNFRRRPSGCLIKPMPDGFSKIIWVEHVEADHSQLSNHFRPLVTTGLAFGATRWINSIVRLIDSSQIMEATTAPIYVDHGVMIPQAGRKSFLNLADRLVRSFCGDINASMGNQWMPLISSESDSLDVRVMIKNNIEDPGKPIATTVVFSTCLWFKVSPSNLFNFLRHEDSRNKWDLLSHKLTIREFAYMNKGINPGNRVSLMRAMNSQDKIEIFYIQESYTDTTGSHIVYAPLDEFALSALANGANPNKIMVLPSGFSILPCGFPSDYYGEDGGSGCILTIAFHIIESHNVRLYIPPESVMTMKKIISETVTNIKDAVMYNNHTNNWHYN 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211452g00042 670 Pfam START domain 227 395 IPR002913 GO:0008289
Stsc211452g00042 670 SUPERFAMILY Bet v1-like 138 402 - -
Stsc211452g00042 670 SMART START_1 198 404 IPR002913 GO:0008289
Stsc211452g00042 670 ProSiteProfiles START domain profile. 134 407 IPR002913 GO:0008289
Stsc211452g00042 670 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 104 658 IPR042160 -
Stsc211452g00042 670 SUPERFAMILY Bet v1-like 426 658 - -
Stsc211452g00042 670 Gene3D - 236 399 IPR023393 -
Stsc211452g00042 670 CDD START_ArGLABRA2_like 138 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211452g00042 Stsc-Chr211452 273458 276924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211452g00042 111 658 Homeobox Transcription Factor Family AT4G04890 37.699 4.17e-115 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211452g00042 K09338 - jre:108992281 507.294