Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211452g00021 ATGGACGGAATCTATGGTATTCTGAAACTTAGGATTAAGAGAGGCATTGATCTCGCAATTCGTGATTTGCTTTCTAGCGACCCTTACGTTGTTGTCACCATGGGTTCTCAGAAACTGAAAACTAAGATCATATATAAAAATACCAATCCTGAGTGGAATGAAGAATTCACCCTTATGGTTGAAGATATTAAAACTCCAATACGTCTGAATGTTTTTGACAAAGATACGTTCACACCAGATGATGAAATGGGTGAAGCAATTATTGATATAAAACCATATGTTGAATGCTGGAAGATGGAATTAGAGAGTCTCCCAGAAGGTTCTGTGGCTGAAAGAATTCAGCCAAGTGAAAATAACTACCTTGCAGATGAAAGTCCCTGCATTTGGCGCCATGGGACTATAATCCAACATATGGTCTTAACATTGAGAAATGTTGAGTGTGGTGAATTAATTTGTGAACTTGAATGGCTTAATATACTAGGTTCTATGCGCTTATTAGAGCTACAACAACAACTATAA 519 0.3719 MDGIYGILKLRIKRGIDLAIRDLLSSDPYVVVTMGSQKLKTKIIYKNTNPEWNEEFTLMVEDIKTPIRLNVFDKDTFTPDDEMGEAIIDIKPYVECWKMELESLPEGSVAERIQPSENNYLADESPCIWRHGTIIQHMVLTLRNVECGELICELEWLNILGSMRLLELQQQL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211452g00021 172 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 156 IPR035892 -
Stsc211452g00021 172 SMART C2_3c 7 102 IPR000008 -
Stsc211452g00021 172 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Stsc211452g00021 172 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 160 IPR044562 -
Stsc211452g00021 172 Gene3D C2 domain 5 158 IPR035892 -
Stsc211452g00021 172 Pfam C2 domain 6 92 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211452g00021 Stsc-Chr211452 157229 158161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211452g00021 38 165 C2H2 Transcription Factor Family AT1G70790 50.000 6.72e-41 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211452g00021 - - ahf:112769638 272.322