Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211452g00008 ATGGGTGTGATAAAGGCTAGCTTTTGCATTGTCTTGGTTCTTTATCTTGTGGGAGCATTTATTAGTGTTGAAGAAAAGAGGAAGGAAGCACAAGAAGAACTCCTTATCCAACTATTTGATCCTAAATCAGAAATTTTTGATCAAGATACGGCAGAGTTATTATGGACTACTTGCTGGGAAGATTTGATTCATTCAGTGATCAAAGATGAAGATTTTGATTCGTGCCCTATAGAATCACCCAACGAAGTTAGTTTAGAAAGAGGATTAATAGCTCAAAGAAACATAAAAAATCTGATTAACACTTGCCAACCCAAATTGAGGGAAAGTTTCTTTCATTGCTTGAGAAAACAAAATCCCCTATTCCATGTCTCCAAGAATAGTTTGCATGCCAAATATGTCAGATTCCTCTCTTCCAGAAGAAATTTGGGTCATTCTTTGCTCCAAGATGTGTCAAGAGCAGAAGATGACGGAGGAGGAGCATCGGCGGCGGCACAAGCTAAGACTCAGAAAGAAAGTGGAAGCGAACAAAATGTTTTTGTTATAGTAGGTGTAACTGCAGTTTTATCATTTGGAATTGCAGCTTTTATTTTCATATTTTGTTGTAAATGTACCAGAGCAAATGCTGATCTAACTGATGAGAAACCCCTTCTCAGCTTGTGTAGGAGTGACTACTCACTTGGTTCCTTTAACAGTAGAAATAATTCTCTTAAGGAGTCAATGAAAAAAGAGGGAAAACTTGAGACTCAGTTATCAAGTAAGATTTTATTTGATGACAAGAACATAGGGTATGAAATAAATTCAGTAGGACTAGGAGGACCTGATGGTGCTCCTCTTATGACTGTAAAACAATCAATGGCAAGACCATCAATGGATTTGAAACCTCCTCCCGGCAAGGTTGGACCACCCCTGCCTTTGAAACCTCCACCTGGAAGGGCAGATCTTTCGCCGGAGCCACCAATTCCTCCTCCTCCAGTTGATGGTGCTACTACAAATAATGCTGGTGCTGTTCCTCCTCCTCCTCCAATTCCTCCACCAAAGTCGGGTAATGCTCCACCTCCTCCTGCACCCCCACCGGGTAAAGGTGGCGGACCTCCACCCCCTCCACCACCTGGTGGAAAAGGCCCTTCACCTCCGCCGCCACCAGGTGGTAAAGGCCCTCCCCCACCTCCAGGTCCTAGGGGAGGAGGTGGTCCAGGTCCTCCAGGGCCTCCTCCTCCCAGAGGTGCAATTGGTGGGAAGAGGCCTCCAGGACCAAGAGGAGCAGAAGGTCCTGGCGGTGTTCCTAAACCGAAACTTAAGCCTTTCTTTTGGGATAAGGTTCAAGCAAACTCAGATCAGGCTATGGTTTGGAATCAACTCAAAGCAGGATCATTCCAGTTCAATGAAGAAATGATGGAGTCGCTTTTCGGATATAATAATGCAGCTGCAGAAAAATCTAAACCCGGAATGAAGAAAGATAATCGCGAACAAGCCCCTCAATACATTCAGATCATTGATCCAAAGAAAGCACAAAATTTATCAATTCTGTTGAAAGCATTGAATGTGACACTAGAAGAAGTTCGTGATGCACTCCTTGAAGGAAATGAAATACCTCCAGAATTCCTACATACTTTGTTGAGGATGGCACCAACTCAAGAGGAAGAACTAAAGCTTAGACTCTTCACAGGGGACCTACAAATGCTTACACCTGCTGATCGATTCTTGAAAGCCATAGTCGACATTCCATTTGCCTTCAAACGAATGGAAACACTACATTACATGTGCACTCTCTCTGATGAGCTCATTGCTACTAGAGATTCTTTTGGAGTTTTGGAGGTTGCATGTAAGGAACTAAAGAGCAGCAGGTTGTTCTTGAAGCTTCTAGAAGCGGTTTTGAAAACAGGAAACCGGATGAACGATGGAACATTCCGTGGCGGTGCGCAAGCCTTCAAACTCGACACGCTGCTGAAGCTATCTGATGTGAAAGGAGTAGACGGGAAAACCACACTTCTTCACTTTGTGGTCCAAGAAATAATAAGAGGAGAAGGCATAAGAGCAATGAGAATGACAAAAGATAGTCTAAGCTTTTCCAGCATAAAAACCGATGACCTTTTAGAAGATGTGTCCTTAGAGAACGAAGACAATTACCGTGAACTCGGCCTCAATACCGTGTCTCGTTTGAGCAGTGAGCTTGAGAATGTCAAGAAAGCATCAGCATTAGATGTTGATGGTTTGATCAGCACAACGGCCAGACTCGGCCATGGCCTTATAAAGGCCAGAGACTTTGTCAACACAGAGCTTAAGACCTTGGAGGATGATCAAGGCTTCTATGAAGTCACAAAGAGCTTTGTGGAGAGTGCAGAAGAAGGTGTTGGTGCCTTGCTCCAAGAAGAGAAGAAGATCATGGCTTTGATAAAGAGCACTGGTGACTACTTTCATGGCAACTCTGGTAGGGATGAAGGCTTGAGATTGTTTCCCATTGTGCGTGATTTCTTGGTAATGTTGGATAAGGTATGCAAGGAGATAAAGAATATACCAAAGAAACCACCACAATCGTCACCGGCACAGGCGCAGGCACCGACACAACCACCGGCACAAACACAAACACAAGCACCAACACAACCACCAGCACCTGCACAAGCATCAACACTAAAGAAAGAAGAGAGTGGTAATGCTAGTTCTAACATAGTGTCAACTGCTCCACCGGAGATACGGCCTCCTCCTCCTATTCCGCCTAATTTTCGCAACCGGCTTCCGGTAGTTTCAAATACGTCGGATGACTTTAGTTCGGATGATGATGCTTCATAG 2787 0.4421 MGVIKASFCIVLVLYLVGAFISVEEKRKEAQEELLIQLFDPKSEIFDQDTAELLWTTCWEDLIHSVIKDEDFDSCPIESPNEVSLERGLIAQRNIKNLINTCQPKLRESFFHCLRKQNPLFHVSKNSLHAKYVRFLSSRRNLGHSLLQDVSRAEDDGGGASAAAQAKTQKESGSEQNVFVIVGVTAVLSFGIAAFIFIFCCKCTRANADLTDEKPLLSLCRSDYSLGSFNSRNNSLKESMKKEGKLETQLSSKILFDDKNIGYEINSVGLGGPDGAPLMTVKQSMARPSMDLKPPPGKVGPPLPLKPPPGRADLSPEPPIPPPPVDGATTNNAGAVPPPPPIPPPKSGNAPPPPAPPPGKGGGPPPPPPPGGKGPSPPPPPGGKGPPPPPGPRGGGGPGPPGPPPPRGAIGGKRPPGPRGAEGPGGVPKPKLKPFFWDKVQANSDQAMVWNQLKAGSFQFNEEMMESLFGYNNAAAEKSKPGMKKDNREQAPQYIQIIDPKKAQNLSILLKALNVTLEEVRDALLEGNEIPPEFLHTLLRMAPTQEEELKLRLFTGDLQMLTPADRFLKAIVDIPFAFKRMETLHYMCTLSDELIATRDSFGVLEVACKELKSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRGEGIRAMRMTKDSLSFSSIKTDDLLEDVSLENEDNYRELGLNTVSRLSSELENVKKASALDVDGLISTTARLGHGLIKARDFVNTELKTLEDDQGFYEVTKSFVESAEEGVGALLQEEKKIMALIKSTGDYFHGNSGRDEGLRLFPIVRDFLVMLDKVCKEIKNIPKKPPQSSPAQAQAPTQPPAQTQTQAPTQPPAPAQASTLKKEESGNASSNIVSTAPPEIRPPPPIPPNFRNRLPVVSNTSDDFSSDDDAS 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211452g00008 928 Pfam Formin Homology 2 Domain 428 828 IPR015425 -
Stsc211452g00008 928 Coils Coil 503 523 - -
Stsc211452g00008 928 MobiDBLite consensus disorder prediction 894 908 - -
Stsc211452g00008 928 PANTHER FORMIN-RELATED 132 848 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Stsc211452g00008 928 SMART it6_source 422 843 IPR015425 -
Stsc211452g00008 928 SUPERFAMILY Formin homology 2 domain (FH2 domain) 492 841 - -
Stsc211452g00008 928 Gene3D Formin, FH2 domain 427 864 IPR042201 -
Stsc211452g00008 928 MobiDBLite consensus disorder prediction 842 893 - -
Stsc211452g00008 928 MobiDBLite consensus disorder prediction 294 326 - -
Stsc211452g00008 928 MobiDBLite consensus disorder prediction 287 433 - -
Stsc211452g00008 928 ProSiteProfiles Formin homology-2 (FH2) domain profile. 422 854 IPR015425 -
Stsc211452g00008 928 MobiDBLite consensus disorder prediction 334 412 - -
Stsc211452g00008 928 MobiDBLite consensus disorder prediction 837 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211452g00008 Stsc-Chr211452 55284 59163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211452g00008 415 872 FH2 protein (formin) Gene Family AT5G54650 62.179 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211452g00008 - - ahf:112772643 780.785