Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211452g00006 ATGCCAACAGTGTGGTTCTCACTGAAGAAGTCACTACACTGCAAATCAGAGCCATCAGAAGTTCATGACCCTAAATCAAGGAAGCAGCAATTGAGCACAATCTTAACCACAAAGAGGGCATCAGGTAGGTCAGGTTGCTCAAGGTCCATTGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCACATTGAGAAGCCACCAACTTGCAGCCCAAGATCCATAGGTAGCAGTGAGTTCCTCAACCCAATAACACATGAAGTCATCTTGAGCAATTCAAGGTGTGAACTCAAAATCACTGGCTATGGTGGAGGGTTCCATGAAGGGCTTGGAACTGTTGGTAATAATAATGGTAATAGCAACAATGGTGGTGGTCTTGGTACTGAAAATTCAACCTTTGTTGGGACTTTAAGGCCTGGTACTCCTGGACCTGGAGGGCACCCTACAATGCACTACTTTAACCCTTCTTTTAGGCCTTCAACCACCCCACCAAGGAAATCTCCTTTCCTTTTAGGAGATAATAATAAAGAAGGGTCTGGCTTCCATGGTGGTGGTGGTGGTGCTGCTGGGTTTCATCATTCAAGCAATAGATTGTCTCTTGAGACAGATTCCAATGGGGCTTGCACTGTTACTTGTCACAAATGTGGAGAGCAATTCACCAAATGGGATGCTGCTGAAGCTCATCATCTCTCTAAGCATGCTGTAACTGAGCTTGTGGAAGGTGATTCATCAAGAAAAATAGTGGAGATAATATGCAGGACAAGCTGGTTGAAATCAGAGAACCAATGTGGTAGAATTGAGAGAGTGTTGAAAGTGCACAACATGCAGAAGACATTGGCAAGGTTTGAAGAATACAGAGAGATGGTGAAGATCAAAGCAAGCAAGCTCCAAAAGAAGCATCCGAGGTGCATCGCGGATGGGAACGAACTCTTAAGGTTCTACGGAACCACAGTTGCATGTTCCTTAGGCCTCAATGGCTCTTCAAGCCTTTGTTTATCAGAGAGATGCTGTGTTTGTAGGATCATAAGAAATGGTTTTTCAGCCAAGAAGGAACTCAAGGGTGGAATTGGTGTTTTCACCACTTCAACAAGTGGAAGAGCCTTTGAATCCATTGAGGTTATTGACCAAGACCCTTCACTGAGAAAAGTGTTGATAGTGTGCAGAGTTATAGCTGGCAGGGTCCATAGGCCTCTAGAGAACATTCAAGAGATTGCAGGCCAAACAGGATTTGATTCATTGGCTGGGAAAGTTGGTCTTTATTCAAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTGATTTGCAAACCCTGA 1335 0.4419 MPTVWFSLKKSLHCKSEPSEVHDPKSRKQQLSTILTTKRASGRSGCSRSIANLKDVIHGSKRHIEKPPTCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGGFHEGLGTVGNNNGNSNNGGGLGTENSTFVGTLRPGTPGPGGHPTMHYFNPSFRPSTTPPRKSPFLLGDNNKEGSGFHGGGGGAAGFHHSSNRLSLETDSNGACTVTCHKCGEQFTKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCIADGNELLRFYGTTVACSLGLNGSSSLCLSERCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIEVIDQDPSLRKVLIVCRVIAGRVHRPLENIQEIAGQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211452g00006 444 Gene3D - 224 443 - -
Stsc211452g00006 444 FunFam C2H2-like zinc finger protein 234 443 - -
Stsc211452g00006 444 SUPERFAMILY ADP-ribosylation 235 443 - -
Stsc211452g00006 444 ProSitePatterns Zinc finger C2H2 type domain signature. 212 233 IPR013087 -
Stsc211452g00006 444 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211452g00006 Stsc-Chr211452 44999 47259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211452g00006 1 444 C2H2 Transcription Factor Family AT5G54630 66.808 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc211452g00006 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211452g00006 - - rcu:8286903 715.687