Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211452g00002 ATGAAAGGGAGAAAGCAAAGGGAAACATCTCCGCCGCCTCCGCCGCCGGCGGCGGTGGTGGCAAAGTATACTTGCATCAACTGCAAACAGGAATTTGAAGAATTCGTTGACATGATGAAACACTCCGAGGATAATCACGGTGACAAACCATTCCTTTGCAAAGACTGTGCTAATAGGGTTTCCACAGAGAAAACCCTTGAAGCCCATCGAAGAGAGGATCATATGGACATGGAGGAACATGCCGATGAAGAACACTCGCTGAACCCGCACGTTTGCAAACAGTGCGCTAACAGATTCTTCACTCAGATTGACCTCGACATGCATAGGGTTGAGTGTATTCATTTCATTCTTTCTGCGGAACGCTACCGATGCATATACTGCGATCATGCTTTGTTTGATACTTACGAACTCATGTTGGATCATTCGAATAAGAAACATTCAGAAGGTTTTTTGTGTGATTCATGTGCCAACAGAATCATTACCAAAAAATTACTCAAGATTCATCAATCTGAGTGTCCTAAAGTGGTTTCCAAGCCTTCTCAACGGAAGTGTAAGAAACAAAATTGA 567 0.4356 MKGRKQRETSPPPPPPAAVVAKYTCINCKQEFEEFVDMMKHSEDNHGDKPFLCKDCANRVSTEKTLEAHRREDHMDMEEHADEEHSLNPHVCKQCANRFFTQIDLDMHRVECIHFILSAERYRCIYCDHALFDTYELMLDHSNKKHSEGFLCDSCANRIITKKLLKIHQSECPKVVSKPSQRKCKKQN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211452g00002 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Stsc211452g00002 188 PANTHER KRAB AND ZINC FINGER DOMAIN-CONTAINING 22 170 - -
Stsc211452g00002 188 SMART c2h2final6 51 74 IPR013087 -
Stsc211452g00002 188 SMART c2h2final6 90 114 IPR013087 -
Stsc211452g00002 188 SMART c2h2final6 23 46 IPR013087 -
Stsc211452g00002 188 SMART c2h2final6 122 146 IPR013087 -
Stsc211452g00002 188 ProSitePatterns Zinc finger C2H2 type domain signature. 92 114 IPR013087 -
Stsc211452g00002 188 Gene3D Classic Zinc Finger 4 79 - -
Stsc211452g00002 188 ProSitePatterns Zinc finger C2H2 type domain signature. 25 46 IPR013087 -
Stsc211452g00002 188 ProSitePatterns Zinc finger C2H2 type domain signature. 53 74 IPR013087 -
Stsc211452g00002 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 79 IPR013087 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc211452g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211452g00002 - K27106 sclv:120332225 75.0997