Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211451g00070 ATGGCTAACAAGAGGTTGTCATACGTTGTGGCATGGGTTGTTATGATGTTTTGGGTTGCATGGTCGATGGAAGAAACAGCAGCAGTGAAACTACGAGTAGGGGTGCCAAAGAAAGATGGTTTCACGCAATTCGTGAAGGTAGTATGGGATCATGATCAGCACAAGTACAATGTTACTGGATATTGCATGGATGTTTTCCATGGCGTATTAAGCATCTTACCTTTCAATGTTTCACTCCAAATTGAACCTTACGTTAATCAATCAGGACACAGCGCTGGAACATACGATCAACTTGTACAACAAGTCCCCCAAAAGTATGATATTGTGGTAGGGGATATCACGATACTGGCGAACCGTTCAAATTATGTTGATTTCACGCTGCCGTATACAGATTCAGGGGTTCAAATGGTTGTAGCAGCTCAGCAGGGGAGGGTTCAAACCATGTGGACTTTTATGAAACCCTTCAGCTGGGATCTTTGGTTAACCATACTTCTCATCTCTATCTTCATAGGTTCTGTCATACTCATCATGGAAAGAAAGGTAATCAACAATAATTCACTGCCTCCTACTGATCATGATCATCAACACCAACAACAGCAGCTAAGCCCCATCAACTTCTTATGGCTTCCAATTTCTCAAGCTGTTCTTCCTGAAAGGGAGGGAGTAGTGAAGAATTGCTCGAGGTTTGTGTTGATGGTGTGGCTTGTGTTGGCGTTTGTGCTGATGCAAAGCTACACGGCGAGCTTGACAAGCATGTTGACGGTGGAGCAGCTTCAACCGAGTTTTCTGAGCGTCAATGATCTACGCGAAGGGGATTACTATGTTGGATACCAAGCAGAATCCTTCGTTTATGATTTGTTGGTATACAAGTGGAAATTCAACTCTTCCAGGCTCAGGACCTATAGCACCATTTCTGAATACCACCACGCTTTGAGGATTGGAAGCCGTGGAGGAGGTGTTTCCGCCATAGTGGACGAGGTTGCCTACCTTAAACTCTTCATTCATAAATATGGATCTAATTACATGATCGCAGGTCCCACCTATCGAACTGATGGCTTTGGTTTTGCATTTGCAAGAAACTCTAGTCTTACAGCAGCATTTTCAAGAGGCATCCTGAACGTGAGTGAGAGTGAGGAAATGGATAAGATTGAGGAAAAATACTTTGGCAAGATTATGAAGAATAATGGATGGGAAGACCAATCATCATCAACAACGTCTTCTTCTTCTCCGAGTAGTCTAACTCTTTATAGCTTTTCAGGGTTGTTCCTCATAACGGGGATTGCTACTTTCTTGGCGTTGCTTGTCTCGGAGACTGTGATTTGGAGAAGACCAATTTCCATGGCCAGAGAATATAGTCGCAAATATTTGTTCCGCACTTCTTCTTCTTCGCAAACTCAACCAACAAGTAGTGACGATGATTCTTCAACACATCATCATCATCGAATGGAATCCTCCGTTTAA 1461 0.4312 MANKRLSYVVAWVVMMFWVAWSMEETAAVKLRVGVPKKDGFTQFVKVVWDHDQHKYNVTGYCMDVFHGVLSILPFNVSLQIEPYVNQSGHSAGTYDQLVQQVPQKYDIVVGDITILANRSNYVDFTLPYTDSGVQMVVAAQQGRVQTMWTFMKPFSWDLWLTILLISIFIGSVILIMERKVINNNSLPPTDHDHQHQQQQLSPINFLWLPISQAVLPEREGVVKNCSRFVLMVWLVLAFVLMQSYTASLTSMLTVEQLQPSFLSVNDLREGDYYVGYQAESFVYDLLVYKWKFNSSRLRTYSTISEYHHALRIGSRGGGVSAIVDEVAYLKLFIHKYGSNYMIAGPTYRTDGFGFAFARNSSLTAAFSRGILNVSESEEMDKIEEKYFGKIMKNNGWEDQSSSTTSSSSPSSLTLYSFSGLFLITGIATFLALLVSETVIWRRPISMAREYSRKYLFRTSSSSQTQPTSSDDDSSTHHHHRMESSV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211451g00070 486 Gene3D - 337 395 - -
Stsc211451g00070 486 CDD GluR_Plant 30 388 - -
Stsc211451g00070 486 Gene3D - 24 148 - -
Stsc211451g00070 486 SUPERFAMILY Periplasmic binding protein-like II 14 390 - -
Stsc211451g00070 486 FunFam Glutamate receptor 2.7 26 147 - -
Stsc211451g00070 486 Gene3D - 149 300 - -
Stsc211451g00070 486 Pfam Ligand-gated ion channel 391 428 IPR001320 GO:0015276|GO:0016020
Stsc211451g00070 486 Pfam Bacterial extracellular solute-binding proteins, family 3 94 390 IPR001638 -
Stsc211451g00070 486 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 21 466 IPR015683 -
Stsc211451g00070 486 SMART GluR_14 30 390 IPR001320 GO:0015276|GO:0016020
Stsc211451g00070 486 MobiDBLite consensus disorder prediction 472 486 - -
Stsc211451g00070 486 MobiDBLite consensus disorder prediction 459 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211451g00070 Stsc-Chr211451 468653 470395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211451g00070 26 435 Ion Channels AT5G11210 38.443 4.97e-89 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211451g00070 K05387 - tpra:123903997 529.635