Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211451g00067 ATGGGATCCTCCTTTAGTTGCTGTGGCTCTGACAAGATTGAAGAAGCAGCGCCAGCATCATTTGGCGCAGTTAACAACAATTCATGGAGAATATTCACATACAAGGAGCTGCATGCAGCTACCAATGGATTCAGTGAGGATAACAAGCTTGGTGAAGGTGGATTTGGAAGCGTCTATTGGGGAAAAACATCTGATGGTCATCAGATAGCGGTGAAGAAACTCAAGGCAATGAACTCAAAGGCGGAGATGGAGTTTGCAGTAGAAGTTGAAGTACTTGGAAGGGTTAGGCACAAGAATTTATTGGGTCTGAGGGGCTACTGTGCTGGCAACGAAGAGAGGCTTATAGTGTACGATTACATGCCCAATCTCAGCCTTCTTTCTCATCTCCATGGACAGTTTTCTAATGAAGTCCAACTCGACTGGAAAAGGAGAATCAACATTGCAATTGGATCTGGTGAAGGCCTTTTGTATTTGCACCATGAAGTCACACCACACATCATCCACAGAGACATCAAAGCAAGCAACGTTCTTCTCAACTCCAACTTCGAGCCTCTCGTTGCGGATTTCGGTTTCGCTAAGCTAATCCCTGAAGGGGTTAGCCACATGACTACCCGTGTTAAGGGCACCTTGGGATACCTGGCTCCAGAATATGCTATGTGGGGAAAAGTGTCCGAGAGTTGTGATGTGTATAGCTTTGGGATTCTTCTGTTGGAGCTTGTAACCGGGAGAAAGCCAATTGAGAAGCTCCCTGGTGGGGTTAAGAGAACCATAACGGAATGGGCTGAGCCTTTCATAAGTAAATCGAGGTTTAGGGATCTTGTTGATCCTAAACTTAGAGGTAACTTTGATGAGAATCAAGTGAAGCAGGCTATTAATGTGGCTGCACTCTGTGTCCAGAGTGAGCCTGATAAGAGACCCAACATGAAGCAAGTGGTTAACCTTCTCAAAGGCTATGAACCCAACCATGATGCTCTTTTGAAGACTACTAGGCTTCACAGTGTCAAATATACTGATACATTGATGGCACTTGATCAGCCTGATGATGACGACGATGATGATGCAACTAATAGCAGTGGCTATGGTGTTTTTAGTGCCATTGAGGTCCAGAAGATGAACCTACCACCAAAACATTCATGA 1137 0.4503 MGSSFSCCGSDKIEEAAPASFGAVNNNSWRIFTYKELHAATNGFSEDNKLGEGGFGSVYWGKTSDGHQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCAGNEERLIVYDYMPNLSLLSHLHGQFSNEVQLDWKRRINIAIGSGEGLLYLHHEVTPHIIHRDIKASNVLLNSNFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGVKRTITEWAEPFISKSRFRDLVDPKLRGNFDENQVKQAINVAALCVQSEPDKRPNMKQVVNLLKGYEPNHDALLKTTRLHSVKYTDTLMALDQPDDDDDDDATNSSGYGVFSAIEVQKMNLPPKHS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211451g00067 378 ProSiteProfiles Protein kinase domain profile. 44 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211451g00067 378 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Stsc211451g00067 378 FunFam PTI1-like tyrosine-protein kinase At3g15890 18 119 - -
Stsc211451g00067 378 PANTHER OS01G0253100 PROTEIN 27 319 - -
Stsc211451g00067 378 SUPERFAMILY Protein kinase-like (PK-like) 28 331 IPR011009 -
Stsc211451g00067 378 CDD STKc_IRAK 50 317 - -
Stsc211451g00067 378 SMART serkin_6 44 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211451g00067 378 Gene3D Transferase(Phosphotransferase) domain 1 120 327 - -
Stsc211451g00067 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Stsc211451g00067 378 Pfam Protein kinase domain 45 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211451g00067 378 Gene3D Phosphorylase Kinase; domain 1 17 119 - -
Stsc211451g00067 378 FunFam PTI1-like tyrosine-protein kinase At3g15890 120 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211451g00067 Stsc-Chr211451 444051 445472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211451g00067 2 362 Trihelix Transcription Factor Family AT1G70460 43.583 2.04e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Stsc211451g00067 Pkinase 6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211451g00067 - - ahf:112698754 675.241