Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211451g00065 ATGGGAATTGAGAGAGGGGGTCTAAAGGGGTTGAGGAGTGGCTGGAGCGTGCCACCCAAGCCATGCGACTCTTGCAAGATGGCTTCAGCCGCACTCTTCTGCCGCCCTGATTCAGCCTTCCTATGCATACCCTGCGATTCCAAGATTCACTCTGCCAACAAGCTTGCTTCCCGCCATGACCGCGTCTGGATCTGTGAGGTCTGCGAGCAGGCACCTGCTGCCGTCACCTGCAAGGCTGACGCTGCTGCTCTCTGCGTCACCTGCGACTCTGACATCCACTCTGCTAACCCCCTCGCCCGCCGCCACGACCGCGTTCCTGTCGAGCCTTTCTTTGACTCTGCTGACTCCATCGTCAAGGCCTCCTTCACCTTCGTCGTCCCAACCGACGCCGCCGACAACGGCATCTCCGCCGATGGCTTCACCAACGACGATGCGGCCTGGCTCATCCCTAACCCGAACTACGGCTCCAAGCTCATGGACGCCCCGGACATGAAATCAAGGGAGATGTTCTTCTCAGAAATGGATCCGTTCCTCGATTTCGATTACTCCAACTCCTTCCAGAACAACAACAGCGCCGGAAACGACAGCGTCGTTCCCGTTCAATCCAAACCTGCTCCCTTGATGAATCACCATGCCGAAGGAACCTGCTTCGACATCGATTTTTGTAGATCGAAGCTCTCCTCCTTCAACTATCCATCTCAGTCTATTAGCCAAAGCGTTTCTTCGTCTTCGCTTGATGTAGGAGTGGTGCCAGACGGGAACACCGTGTCAGATATATCATACTCGTTCGGACGGAACTGCTCCGATTCGAGTGGGATGGGATCAGCGGGAAGTGGCGGCGGAGCTACGCAGCTGTGTGGGATGGACCGTGAGGCGAGGGTGCTGAGGTACAGAGAGAAGAGGAAGAACCGTAAGTTCGAGAAAACCATCAGATACGCCTCAAGGAAGGCTTATGCCGAAACCCGGCCAAGGATCAAGGGGCGGTTCGCTAAACGAACCGAAATCGAGTCGGAGGTGGACCGCCTTTACAGCCCCGGCGGTGGTGTGATGCTGGAGAGCCAGTACGGCGTGGTGCCGTCGTTTTAG 1086 0.5672 MGIERGGLKGLRSGWSVPPKPCDSCKMASAALFCRPDSAFLCIPCDSKIHSANKLASRHDRVWICEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLARRHDRVPVEPFFDSADSIVKASFTFVVPTDAADNGISADGFTNDDAAWLIPNPNYGSKLMDAPDMKSREMFFSEMDPFLDFDYSNSFQNNNSAGNDSVVPVQSKPAPLMNHHAEGTCFDIDFCRSKLSSFNYPSQSISQSVSSSSLDVGVVPDGNTVSDISYSFGRNCSDSSGMGSAGSGGGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESEVDRLYSPGGGVMLESQYGVVPSF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211451g00065 361 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Stsc211451g00065 361 Pfam CCT motif 290 332 IPR010402 GO:0005515
Stsc211451g00065 361 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Stsc211451g00065 361 CDD Bbox1_BBX-like 21 64 - -
Stsc211451g00065 361 ProSiteProfiles CCT domain profile. 290 332 IPR010402 GO:0005515
Stsc211451g00065 361 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 350 IPR045281 GO:0009909
Stsc211451g00065 361 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Stsc211451g00065 361 Pfam B-box zinc finger 19 61 IPR000315 GO:0008270
Stsc211451g00065 361 CDD Bbox1_BBX-like 64 107 - -
Stsc211451g00065 361 SMART bboxneu5 65 107 IPR000315 GO:0008270
Stsc211451g00065 361 SMART bboxneu5 17 64 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211451g00065 Stsc-Chr211451 434296 436211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211451g00065 1 361 C2C2-CO-like Transcription Factor Family AT5G57660 55.764 5.38e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc211451g00065 zf-B_box 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211451g00065 - - gmx:100805693 572.392