Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211451g00044 ATGAATAATTTCCATCCAAACACCTCTCTTCACCACCTGAGTCATCATCACTTACCTACTACTGCAGATGAGAACCACCCAATCAACCTTGACCTTCTTCTTGAGCCTTCTTCTTCTTCTTCAACTTCTTCATCATCTTCACCTTTTAGTGGTAACAATAATAATAATACGATGGAGGCAAGGGTATTCTCATGCAACTACTGCCAGAGAAAGTTCTACAGCTCTCAGGCCTTGGGAGGACATCAAAACGCTCACAAGCTCGAAAGGACCCTCGCCAAGAAGACCAGGGAGATCACTTCATCCATGCAAGATCATCACAGATCAAACTTCATCAATTCTCCTAATTCACATCATGCTTTTGGTGTTCTTGAGAACCATGTCCATGCTGCTGGAGGAATAAGAAGAGATAATAATAATAGCTTCAGCTACTACGGTAGTGGTTCAAAACAAGGTGTGGCTTCTTCTTCTTGGTCCCGTGCTTACACTACTACTTCTGAAAATCTTCATCAGGAGGATATTAGCCAGCTTGACTTGTCCTTAAGGCTTTAA 549 0.4226 MNNFHPNTSLHHLSHHHLPTTADENHPINLDLLLEPSSSSSTSSSSSPFSGNNNNNTMEARVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKTREITSSMQDHHRSNFINSPNSHHAFGVLENHVHAAGGIRRDNNNSFSYYGSGSKQGVASSSWSRAYTTTSENLHQEDISQLDLSLRL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211451g00044 182 MobiDBLite consensus disorder prediction 1 15 - -
Stsc211451g00044 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Stsc211451g00044 182 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 18 117 IPR044246 GO:0009788
Stsc211451g00044 182 MobiDBLite consensus disorder prediction 1 54 - -
Stsc211451g00044 182 MobiDBLite consensus disorder prediction 32 54 - -
Stsc211451g00044 182 SUPERFAMILY beta-beta-alpha zinc fingers 60 90 IPR036236 -
Stsc211451g00044 182 Gene3D Classic Zinc Finger 38 118 - -
Stsc211451g00044 182 FunFam Zinc finger protein 2 38 110 - -
Stsc211451g00044 182 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211451g00044 Stsc-Chr211451 320009 320557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211451g00044 3 182 C2H2 Transcription Factor Family AT5G57520 45.109 1.15e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc211451g00044 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211451g00044 - - aip:107620426 232.646