Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211451g00043 ATGAGCTATAATATACGTGAGAATGGAGACATTCATAGATCAGAAGACTTGCACACACCACTAACCACCACAACCACAAATCAGTACAAACCAAACAAGATGGAATCTGCTACTACCACTCAAACAGAGCAGCAATTTATCTTCAGATCCAAGCTTCCTGACATTCCCATCCCCACCCACCTTCCTCTCCATTCTTACTGCTTCCAGAATCTTCCACTCTTCCATGACCGCCCATGCCTCATCGACGCCGAAACCGCCACCACTCTTACCTACGCCGACGTGCACCTCGCCACCCGCCGCATCTCCGCTGGCCTCCACTCCATCGGCATCCGCAAGGGCGATGTCATCATGCTCGTCCTCCGCAACTGTCCCGAATTCGCCCTCGCCTTCCTCGGCGCCTCCCGCTGCGGCGCCCCTATCACCACCGCCAACCCCTTCTACACACCCGCCGAGCTGGCAAAACAAGCCACCGCCACCAAAACTAAGCTCATCATAACGCAATCCGCCTACGTCGAGAAATTCAAAGAGTACGTGGAAACCAACAACGGCGACGTCAAGATCATGTGCATTGATGGATCTCCTGAAGAATCACAATCACAGGACACTAGTGTTCTTCACTTTTCCATTCTCACAAATTCCAACGAAAACGACGAGCCTCAGGTTAACATCACCCCCGACGATCTCGTGGCGATCCCGTTCTCCTCCGGGACCTCGGGGCTGCCGAAGGGAGTGATGTTAACGCACAGCAACCTGGTTACGACGGTGGCGCAACTTGTTGACGGCGAGAATCCTCACCAGTACACGCACAGCGAGGACGTGCTCCTCTGCGTGCTGCCAATGTTTCATATTTACGCGCTGAACTCGATCTTGCTGTGTGGGATTCGTGCTGGTGCGGCGGTTCTGATCGTGCAGAAGTTTGAGATAACGACGCTGATGGAGTTGATAGAGAAGTACAGGGTGACGGTGGCGTCTCTTGTGCCACCGATAGTGTTGGCGGTGGTGAAGAGTGGGGATGCTCACAGATATGATCTGTCTTCGATTCGTGGAGTGATATCAGGTGCTGCTCCCATGGGAATAGAGCTTCAAGAAGCTGTCAAGGCTAGGCTTCCCAATGCCACCCTCGGACAGGGGTACGGGATGACAGAAGCAGGGCCACTAGCCATAAGCTTAGCATTTGCAAAGGAACCATTCAAGGTTAAAGCAGGTGCATGCGGGTCCGTCGTTAGAAACGCTGAGATGAAAATCGTGGACCCTGACACTGGTGCTTCCCTTCCGCATAACAGACCCGGTGAAATTTGCATTCGAGGCACTAAAGTCATGAAAGGGTACCTGAATGACCCAGAGGCGACAGAGAGAACCATAGACAAAGAGGGATGGTTACATACAGGTGACATTGGTTACATTGATGATGATGAAGAGCTCTTCATCGTTGATCGCTTGAAGGAGCTTATCAAATACAAAGGTTACCAAGTGGCACCTGCTGAGCTGGAATCTTTGTTGATTGCCCACCCTAACATCTCTGAGGCCGCTGTTGTACCCATGAAAGATGAAGTTGCCGGAGAAGTACCAGTTGCATTTGTTATAAGATCAAACGGTTCTGATATCACCGAGGATGAAATCAAGAAATATATTTCTAAACAGGTGGTATTTTACAAGAGAATAAACAGAGTGTTCTTCACTGAAAGTATTCCTAAAGCAGCGTCAGGCAAAATTCTGAGGAAGGTATTAACAGCAAGGCTTAACGAAGGTTTGGTGGCTAATTAG 1764 0.5034 MSYNIRENGDIHRSEDLHTPLTTTTTNQYKPNKMESATTTQTEQQFIFRSKLPDIPIPTHLPLHSYCFQNLPLFHDRPCLIDAETATTLTYADVHLATRRISAGLHSIGIRKGDVIMLVLRNCPEFALAFLGASRCGAPITTANPFYTPAELAKQATATKTKLIITQSAYVEKFKEYVETNNGDVKIMCIDGSPEESQSQDTSVLHFSILTNSNENDEPQVNITPDDLVAIPFSSGTSGLPKGVMLTHSNLVTTVAQLVDGENPHQYTHSEDVLLCVLPMFHIYALNSILLCGIRAGAAVLIVQKFEITTLMELIEKYRVTVASLVPPIVLAVVKSGDAHRYDLSSIRGVISGAAPMGIELQEAVKARLPNATLGQGYGMTEAGPLAISLAFAKEPFKVKAGACGSVVRNAEMKIVDPDTGASLPHNRPGEICIRGTKVMKGYLNDPEATERTIDKEGWLHTGDIGYIDDDEELFIVDRLKELIKYKGYQVAPAELESLLIAHPNISEAAVVPMKDEVAGEVPVAFVIRSNGSDITEDEIKKYISKQVVFYKRINRVFFTESIPKAASGKILRKVLTARLNEGLVAN 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211451g00043 587 Gene3D - 481 584 IPR045851 -
Stsc211451g00043 587 CDD 4CL 57 576 - -
Stsc211451g00043 587 Pfam AMP-binding enzyme 75 486 IPR000873 -
Stsc211451g00043 587 Pfam AMP-binding enzyme C-terminal domain 495 570 IPR025110 -
Stsc211451g00043 587 MobiDBLite consensus disorder prediction 1 29 - -
Stsc211451g00043 587 SUPERFAMILY Acetyl-CoA synthetase-like 40 582 - -
Stsc211451g00043 587 FunFam 4-coumarate--CoA ligase 2 482 583 - -
Stsc211451g00043 587 ProSitePatterns Putative AMP-binding domain signature. 231 242 IPR020845 -
Stsc211451g00043 587 Gene3D - 38 480 IPR042099 -
Stsc211451g00043 587 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 43 577 - -
Stsc211451g00043 587 FunFam Long-chain-fatty-acid--CoA ligase FadD 49 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211451g00043 Stsc-Chr211451 309813 313526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211451g00043 47 548 Monolignol Biosynthesis Gene Families AT1G51680 65.415 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211451g00043 K01904 - gmx:548034 880.937