Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211451g00042 ATGGAACCATTAAGAAGCGGTGGTGACCATGATGACTTCATTTTCCGTTCCAAGCTCCCTGACATTTACATCCCAAACCACCTCCCTCTCCACACTTACTGCTTCCAGAATATCTCCCGCTTCAAGGACCGTCCATGCCTTATCAACGCCACCACCAGCGAAACCTTCACATACGCCGCCGTCGAGCTCACCGCCAGAAAAGTTGCCGCTGGCCTCAACAACCTCGGTGTCCGTCAAGGCGACGTCATCCTCCTCCTCCTCCAGAACTGCCACCAGTTTGTCTTCGCCTTCCTCGGCGCCTCCTACCGCGGCGCCATCGTCACCACCGCCAACCCCTTCTACACACCCGCCGAGGTCGCCAAGCAGGCCACCGCCTCCGGCGCTAAGCTCGTCATAACTCAGTCGTCCTACGTGGACAAGGTGAAGGATCTGGCAAGGGAGAAACACATGAAGGTGGTGTGCATCGACTCGCCGCCGCAGGGTTGCCTTCAGTTCTCGGAGCTAACGGAGGCGGACGAGAGAAACATCCCTGCGGTGAAAATCTCCCCGGATGATGTAGTTGCACTGCCGTATTCGTCCGGCACGACGGGGCTCCCGAAAGGGGTAATGCTAACACACAAAGGGTTAGTGACGAGCGTGGCGCAGCAGGTGGACGGAGAGAACCCTAATCTGTACATTGACGAGAACGATGTGGTGGTTTGCGTGCTTCCGCTGTTCCACATTTACTCCCTGAATTCTGTTCTGCTGTGCGGGCTTCGAGTTGGGGCTGCAATAGTGATAATGCACAAGTTTGAGGTGGTGGGGCTGCTTGAAGCGGTTGAGAAGCATAGGGTGAGCGTGGCGCCATTGGTGCCGCCGATTGTTCTGGCAATGGTGAAGAGCGGGGAGGTGGCACGCTACGATTTATCGTCTATTCGTATGGTGATGTCTGGTGCGGCCCCATTGGGGAAGGACCTTGAGGATGCTTTGAGGGCCAACCTCCCTAATGCTACCTTTGGCCAGGGCTATGGGATGACGGAAGCAGGGCCAGTGCTTTCTATGTGCTTAGCCTTTGCAAAAGAACCTTTTGAGGTGAAATCCGGTGCGTGCGGGACCGTCGTAAGAAACGCTCAGATGAAGATTATAGACCCTCTCACTTCTGCTTCTCTTCCCAGAAATCATGCCGGTGAGATTTGCATTAGAGGCAACCAAATCATGAAAGGTTACTTAAACGACCCTAAGGCGACAGAAGGTACCATAGACAAAGAGAGATGGTTGCATACCGGTGACATAGGATACATCGATGACAATGATGAGCTATTCATCGTTGATCGGTTAAAGGAGTTAATCAAATACAAAGGATTTCAAGTGGCTCCTGCAGAGCTCGAAGCTATGTTGATTTCTCACCCTAACATTTCCGATGCAGCTGTTATAGCTATGAAAGATGAGGCAGCAGGGGAAGTTCCTGTTGCATTTGTTGTAAGATCAAACGCTTCTAAGATATCGGAGGATGATATCAAACTATACATATCAAAGCAGGTTGTATTTTACAAGAGAATAAACAAAGTTTTCTTTGTGGATTCGATCCCAAAGGCACCGTCGGGTAAGATTTTGCGGAAACACCTCAGAGAAAAGCTTGCATCTGGGCTTCCCTTTTAG 1638 0.5159 MEPLRSGGDHDDFIFRSKLPDIYIPNHLPLHTYCFQNISRFKDRPCLINATTSETFTYAAVELTARKVAAGLNNLGVRQGDVILLLLQNCHQFVFAFLGASYRGAIVTTANPFYTPAEVAKQATASGAKLVITQSSYVDKVKDLAREKHMKVVCIDSPPQGCLQFSELTEADERNIPAVKISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYIDENDVVVCVLPLFHIYSLNSVLLCGLRVGAAIVIMHKFEVVGLLEAVEKHRVSVAPLVPPIVLAMVKSGEVARYDLSSIRMVMSGAAPLGKDLEDALRANLPNATFGQGYGMTEAGPVLSMCLAFAKEPFEVKSGACGTVVRNAQMKIIDPLTSASLPRNHAGEICIRGNQIMKGYLNDPKATEGTIDKERWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEAMLISHPNISDAAVIAMKDEAAGEVPVAFVVRSNASKISEDDIKLYISKQVVFYKRINKVFFVDSIPKAPSGKILRKHLREKLASGLPF 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211451g00042 545 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Stsc211451g00042 545 CDD 4CL 24 535 - -
Stsc211451g00042 545 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Stsc211451g00042 545 FunFam 4-coumarate--CoA ligase 2 441 542 - -
Stsc211451g00042 545 Pfam AMP-binding enzyme 36 445 IPR000873 -
Stsc211451g00042 545 Gene3D - 440 541 IPR045851 -
Stsc211451g00042 545 FunFam Long-chain-fatty-acid--CoA ligase FadD 16 440 - -
Stsc211451g00042 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 538 - -
Stsc211451g00042 545 Gene3D - 6 439 IPR042099 -
Stsc211451g00042 545 SUPERFAMILY Acetyl-CoA synthetase-like 13 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211451g00042 Stsc-Chr211451 302611 306117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211451g00042 5 507 Monolignol Biosynthesis Gene Families AT1G51680 68.297 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211451g00042 K01904 - qsa:O6P43_022302 879.782