Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211451g00025 ATGTATTCGAATGCGAGCCAGTTTGACGGCAACGCCGCCTTCTCCGGCGGCGGATTCATGCCTTCTCAGACTACTCAGACTCACGACTCTTCCTCCACCTTCACTACTTCCAGAAATCGTGATGCTCAGTCGTTGCTTCCTCTGACGGTGAAGCAGATAAACGATGCGTATAACTCGAGCGATAATAAATCCAATTTGATTGTCGATGGTGTTGATGTCAACACTGTTACACTCGTAGGGAGAGTATGCAACAAAAATGGAATGATTACTGAAGTTCATTTTGACCTTGATGATGGCACTGGAAGGATTGAGTGTAATAAATGGCTTCAAGAAGCAGCGGAATCAAATGAAGTGGACTGTATCATGGATGGAGTGTATGTGCGTCTTCATGGACAATTAAAAGGCCTTAATGGGAAGAGGATTTTGAATGTTTTCTCTTTTAGGCCTGTGTCTGACTTTAATGAGATTGCCAACCATTTCATTGAATGTATATATGTTCATCTCTACAATACGAAGCAAAAGCTTCAGGCTGGTGTACCTAATCAGCAACATGTTACAAATTCAGCAACAATAACACCCACAAAAGGTTACCAAGTTCTCCCACCAAATCAATTCTCTGGTCTGCATAACAATGGTCAGCCAAGGTCCGAAGACATGGTCCTGGATTTTTTGCATCTTCCCCAACACAGTGCATTGGAAGGGGGAGTCTCTATTAAACTTATTGAAGAGAATCTTCGACTTCCTAAGGACAAGCTGATGTTGGCTATCAAAAATCTTATTGACGAAGGCCAGATTTATGAAGCTATAAGTGATCACTACAAGTCAACCATCAATGGTTGA 840 0.4214 MYSNASQFDGNAAFSGGGFMPSQTTQTHDSSSTFTTSRNRDAQSLLPLTVKQINDAYNSSDNKSNLIVDGVDVNTVTLVGRVCNKNGMITEVHFDLDDGTGRIECNKWLQEAAESNEVDCIMDGVYVRLHGQLKGLNGKRILNVFSFRPVSDFNEIANHFIECIYVHLYNTKQKLQAGVPNQQHVTNSATITPTKGYQVLPPNQFSGLHNNGQPRSEDMVLDFLHLPQHSALEGGVSIKLIEENLRLPKDKLMLAIKNLIDEGQIYEAISDHYKSTING 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211451g00025 279 Pfam Replication protein A C terminal 167 271 IPR014892 -
Stsc211451g00025 279 MobiDBLite consensus disorder prediction 16 38 - -
Stsc211451g00025 279 Gene3D - 37 172 IPR012340 -
Stsc211451g00025 279 PANTHER REPLICATION PROTEIN A-RELATED 7 277 IPR040260 -
Stsc211451g00025 279 CDD RPA2_DBD_D 75 168 - -
Stsc211451g00025 279 Gene3D - 209 277 IPR036388 -
Stsc211451g00025 279 FunFam replication protein A 32 kDa subunit A-like 38 172 - -
Stsc211451g00025 279 SUPERFAMILY Nucleic acid-binding proteins 45 172 IPR012340 -
Stsc211451g00025 279 SUPERFAMILY "Winged helix" DNA-binding domain 215 276 IPR036390 -
Stsc211451g00025 279 PIRSF RPA32 2 277 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211451g00025 Stsc-Chr211451 198923 202107 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211451g00025 1 274 Core DNA Replication Machinery Family AT2G24490 43.369 3.15e-72 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211451g00025 K10739 - qsa:O6P43_022320 354.369