Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211451g00024 ATGGATATGGATTCTTCCTCATCTTCTTCACCGCCTCTTTCACTTCCTTTCTCTCTCTCCAACAACAACAACCACTTCTCTCCCTCTTCTCATCACTCTTCTTCCTCTCCCCTCTCCCTCTTCCATCCCTCCTTCACCTATTCCACCGCCACTCCTTCTCTCACCCTTACACCATCCGCTAAAGATATCCATGCATCGCCGGACCCAACTGACGCCGCCGCTGGTCGTGCAACTAGCCTCTCCATATTCACCGGGGGACCAAAGTTCGAGGACTTCCTTAGCGGCTCCGCAGCAGCAACTGCCACAGTATGTGCACCGCCGCCGCCGCAGCAGCTAACTCAGCTGTCCACCGACAAGAACGGCGTGGTATATGACGGTGAGCTGAAGACAACGATAGCAGCGTGCTTCCCTGGAAGTGGCGTTGAAGTTATTCAGAAGGCTTCTCCGAAGAAAAGTGTGGACACCTTCGGACAACGCACCTCCATCTACCGTGGAGTCACAAGACATAGATGGACTGGGAGATATGAAGCTCATCTTTGGGATAACAGCTGCAGAAGGGAAGGACAAAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGCTATGACAAGGAAGAGAAAGCGGCCAGAGCTTATGATCTCGCTGCTCTCAAGTACTGGGGTCCAACCACTACCACCAACTTTCCCGTTTCCAACTATGAGAAGGAGCTAGAGGAAATGAAGAACATGACAAGGCAAGAGTTTGTTGCTTCTCTAAGAAGGAAGAGCAGTGGGTTCTCTAGGGGAGCCTCTATATACAGAGGAGTAACTAGGCATCACCAGCATGGGCGATGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACGCAAGAAGAAGCTGCGGAGGCGTACGACATTGCAGCAATCAAGTTCAGAGGACTGAATGCTGTTACCAACTTTGACATGAGTCGCTACGATGTGAAGAGCATTGCTAACAGCACCCTCCCTATTGGTGGATTATCAACCAACAAGAACAAGAACTCCAATAATGATTCTCTTTCAAATCACTCCGATGACCGTGACTCTTCTGCTGCTGCCACCACCAACCACCACCACCAACCACCACCTTCATCAACCTCCACCCTCAGCTTCGCCGTCCCCATCAAACAGGACCCTTCACCTGATTACTGGTCCATCCTGGCCTACTCCGGTAATAACACTACTCACCTTGAAGCTAGTGCTGTTGCCAGCAGGGGTACAACTGTAATTGCACCACCACCCTCTTTGATGGACTTCAACTCCTCCGGTGCTCCATTCTTCAACGGAGGAGGGATCTATGTGAACCAACAACAACAACAGAGTGGTGGTTCATCATCATCATCTTCGGGTGGATCTTCTTCGATTCCAATGGCAACACCTATAGTTTCCTTAAATAGTAACAGTAATTATGAGAACTGGATTGGGCCAACACTGCACACATTCCAATCTCATCATGCAAAACCAAGTCTCTTTCAAACGCCAATATTCGGAATGGAATGA 1542 0.4961 MDMDSSSSSSPPLSLPFSLSNNNNHFSPSSHHSSSSPLSLFHPSFTYSTATPSLTLTPSAKDIHASPDPTDAAAGRATSLSIFTGGPKFEDFLSGSAAATATVCAPPPPQQLTQLSTDKNGVVYDGELKTTIAACFPGSGVEVIQKASPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSTNKNKNSNNDSLSNHSDDRDSSAAATTNHHHQPPPSSTSTLSFAVPIKQDPSPDYWSILAYSGNNTTHLEASAVASRGTTVIAPPPSLMDFNSSGAPFFNGGGIYVNQQQQQSGGSSSSSSGGSSSIPMATPIVSLNSNSNYENWIGPTLHTFQSHHAKPSLFQTPIFGME 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211451g00024 513 CDD AP2 161 230 IPR001471 GO:0003700|GO:0006355
Stsc211451g00024 513 Pfam AP2 domain 264 314 IPR001471 GO:0003700|GO:0006355
Stsc211451g00024 513 Pfam AP2 domain 162 220 IPR001471 GO:0003700|GO:0006355
Stsc211451g00024 513 Gene3D AP2/ERF domain 264 324 IPR036955 GO:0003700|GO:0006355
Stsc211451g00024 513 Gene3D AP2/ERF domain 162 230 IPR036955 GO:0003700|GO:0006355
Stsc211451g00024 513 SUPERFAMILY DNA-binding domain 161 230 IPR016177 GO:0003677
Stsc211451g00024 513 MobiDBLite consensus disorder prediction 337 386 - -
Stsc211451g00024 513 MobiDBLite consensus disorder prediction 445 472 - -
Stsc211451g00024 513 FunFam AP2-like ethylene-responsive transcription factor ANT 161 230 - -
Stsc211451g00024 513 ProSiteProfiles AP2/ERF domain profile. 264 322 IPR001471 GO:0003700|GO:0006355
Stsc211451g00024 513 SMART rav1_2 264 328 IPR001471 GO:0003700|GO:0006355
Stsc211451g00024 513 SMART rav1_2 162 234 IPR001471 GO:0003700|GO:0006355
Stsc211451g00024 513 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 88 434 - -
Stsc211451g00024 513 MobiDBLite consensus disorder prediction 1 33 - -
Stsc211451g00024 513 PRINTS Ethylene responsive element binding protein signature 304 324 IPR001471 GO:0003700|GO:0006355
Stsc211451g00024 513 PRINTS Ethylene responsive element binding protein signature 163 174 IPR001471 GO:0003700|GO:0006355
Stsc211451g00024 513 MobiDBLite consensus disorder prediction 337 353 - -
Stsc211451g00024 513 MobiDBLite consensus disorder prediction 368 386 - -
Stsc211451g00024 513 ProSiteProfiles AP2/ERF domain profile. 162 228 IPR001471 GO:0003700|GO:0006355
Stsc211451g00024 513 FunFam AP2-like ethylene-responsive transcription factor 263 324 - -
Stsc211451g00024 513 CDD AP2 263 324 IPR001471 GO:0003700|GO:0006355
Stsc211451g00024 513 SUPERFAMILY DNA-binding domain 263 324 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211451g00024 Stsc-Chr211451 187365 190589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211451g00024 123 513 AP2-EREBP Transcription Factor Family AT5G57390 55.504 1.60e-142 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc211451g00024 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211451g00024 K09285 - gmx:100797828 610.912