Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211451g00023 ATGGCTGCGGATTCGAATATTGAGGGCTTGGTGCTTGATCCTTCTAAATGTAGTAAGCTGAGTATGGAGGAAAAAAGAGAACTTGTATATGAATTGTCCAAGTGGTCTCATGGTGCATCCGAGATGCTACAGTCATGGAGCCGTCAAGAAATTTTGCAAATCTTGTGTGCAGAGATGGGGAAAGAAAGGAAGTATACTGGGTTGACGAAGTTGAAAATTATAGAGAACCTTCTAAAAATTGTTTCTGAAAAGAAATCTGCGGGGCAAGAAACTGCCACAGACTCTGAACCACAACAATCTTCTCCTGCAAATGGTCAGAAACCCGCCAAAAGGCACAGAAAAACTGAGAATCCATCTCGATTGCCGGTGCCTGCAACCAATGTTCCAGTTAATAATGGTGGTGATGTGGGTAGCGTCACATGCTGCAAAAACTCAGCTTGCAAAGCTGCGCTTAATCCAGCTGATAAATTCTGCAAACGGTGTTCATGTTGCATTTGTCATCAATATGATGACAACAAGGATCCTAGCCTATGGTTAATATGCAGCTCTGAGTCACCTTTTCCTGGCGTTTCATGTGGCTTGTCATGCCACCTTGAGTGTGCTATAAAACATGTTGATTCTGGAATTGGCAAAGATAGTGAACGTCCCAAGCTTGATGGAAGCTTCTATTGTGTCTCTTGTGGGAAAGTAAACGATTTACTCGGGTGCATGAGAAAACAACTGACAGTGGCAAAGGATACCAGACGTGTGGACATACTTTGTTACCGTGTCTCCTTAAGCCAAAGACTTCTTCAAGGGACTGTAATGTATCAAAAGCTTTATGAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGATGTGGGTCCATTGACCAGCTCACCAGCAAAGATTGGCAGGGGGATTGTGAATAGGCTTTTATCTGGACCAGAAGTTCAGAAACTCTGTGGATCTGCTCTGGAATCTCTTGATTCACTGCTTTTGAAAAGGATCTCGCCTGTGTCTCCCAATCCAACTACTCACCGGGATCACTCAACACCTAACGATGCATATATACTTGCTCCAAACATGGTGAGGTTTGAAGACATCACTGCAACGTCTCTTGCTATTGTTTTGGGTTCTGAAAATCATGGAGAAAACATTTCTGGTTACACCTTTTGGCATCGCAAATCTGATGATGAGGATTACCCTGTGGACCCTACTTGCACTTTGCTTCTTCCAAATAGGAGATTCAGTATCAGAGATCTTATTCCTGCCACAGAATACACTTTCAAAGTTGTTTCCAATGACTCAAGGGAGTCAGGTATGTGTGAAGTTCATATCTCAACGGAGCACGGTGAGGATGAAGTCCCTAATTGCTCGGCAACAGAAAGAAGCCAGAGCCCAGTAACCAATTGCAGCAGCCTTTCCAATCCATCTTCAGTGGAAGATGAAACTAATAACAGCAATCCATATAGCGACCAGACTGATAACCGCCTAGAAAATTATCATAATTATTGCAAGGATTCTGATCAAGTTGCTACTGGAAATAAATCAAGTGGTGCTATTATCTGTTCTAATATAGGTGGAGCAGGACTTCCCACCGATGCTGATTCCTTGTCGGACAAGCAGCATTCTGCAGGAATAGCTGGCCCAGTTCCAAGTTCTGATGCACTAAAGCTTGAAAACAATCATTCACCGGAGGAACAAGTTACTGAGGACATGAGTGTCGATGATGGGTTGAATTCACCAGTGTTAACTGGCAGAGAATGTGTGCCATTAGTAGCTAGCTCAGAAGGAGGCTTACCTAATACTCCATGCAAATTGGAAATACTCAAGGATGGGTCAGGAAGAAATGGGAGATCTAAATCTGGCGGCAAAGATCAAGAAAATGGATCCGGGAAGAGGGAAGGGGCACGAGACGGGAGCACGTCAAAGAAGAGAAGCGGGGAAAGGCCAGATGAGGGCTGCACAGCCAACGGGTTTTCAGATCGTGATTTTGAGTATTATGTGAAGGTGATTAGATGGTTAGAGTGTGAAGGGCACATTGAGAAGAATTTCAGGCAGAAGTTTCTGACTTGGTATAGCTTAAGAGCAACCCAACAAGAAGTGAGGATTGTGAAAATATACATAGACACATTTCTTGAAGATCCAGCATCTCTTGCTGAGCAACTTGTGGACACTTTCACAGAATGCATATCCAGCAAGAGAACTTCAGTGGTACCTGCAGGATTCTGCATGAAGCTTTGGCATTGA 2235 0.4358 MAADSNIEGLVLDPSKCSKLSMEEKRELVYELSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSAGQETATDSEPQQSSPANGQKPAKRHRKTENPSRLPVPATNVPVNNGGDVGSVTCCKNSACKAALNPADKFCKRCSCCICHQYDDNKDPSLWLICSSESPFPGVSCGLSCHLECAIKHVDSGIGKDSERPKLDGSFYCVSCGKVNDLLGCMRKQLTVAKDTRRVDILCYRVSLSQRLLQGTVMYQKLYEIVDEAVKKLEPDVGPLTSSPAKIGRGIVNRLLSGPEVQKLCGSALESLDSLLLKRISPVSPNPTTHRDHSTPNDAYILAPNMVRFEDITATSLAIVLGSENHGENISGYTFWHRKSDDEDYPVDPTCTLLLPNRRFSIRDLIPATEYTFKVVSNDSRESGMCEVHISTEHGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNSNPYSDQTDNRLENYHNYCKDSDQVATGNKSSGAIICSNIGGAGLPTDADSLSDKQHSAGIAGPVPSSDALKLENNHSPEEQVTEDMSVDDGLNSPVLTGRECVPLVASSEGGLPNTPCKLEILKDGSGRNGRSKSGGKDQENGSGKREGARDGSTSKKRSGERPDEGCTANGFSDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATQQEVRIVKIYIDTFLEDPASLAEQLVDTFTECISSKRTSVVPAGFCMKLWH 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211451g00023 744 MobiDBLite consensus disorder prediction 88 106 - -
Stsc211451g00023 744 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 744 IPR044514 GO:0010048|GO:0040029
Stsc211451g00023 744 MobiDBLite consensus disorder prediction 453 492 - -
Stsc211451g00023 744 MobiDBLite consensus disorder prediction 598 651 - -
Stsc211451g00023 744 CDD PHD_VIN3_plant 162 227 - -
Stsc211451g00023 744 Gene3D Immunoglobulins 352 449 IPR013783 -
Stsc211451g00023 744 MobiDBLite consensus disorder prediction 607 651 - -
Stsc211451g00023 744 SUPERFAMILY Fibronectin type III 346 430 IPR036116 GO:0005515
Stsc211451g00023 744 CDD FN3 354 434 IPR003961 GO:0005515
Stsc211451g00023 744 Pfam PHD - plant homeodomain finger protein 142 261 IPR032881 -
Stsc211451g00023 744 MobiDBLite consensus disorder prediction 88 129 - -
Stsc211451g00023 744 MobiDBLite consensus disorder prediction 443 492 - -
Stsc211451g00023 744 MobiDBLite consensus disorder prediction 529 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211451g00023 Stsc-Chr211451 149358 154086 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211451g00023 4 491 PHD Gene Family AT4G30200 53.346 2.10e-161 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211451g00023 - - adu:107460123 1412.9