Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211451g00020 ATGAGGTACATTCGAACCACCAGCTTGAAGAGGCTCTTCTCCTTCAAAAGGCGCAGTTTTGAGGAAAAATCTCTCACCAGGAGCGGTTCCACTGCCTCAGAAGAAGAACAATGTTCTTCAAAACCCTCTTGGAAGTGCTTCTCCTATGAAGAGCTTTTTGATGCCACCAATGGTTTCAGCTCAGAGAATTTGGTTGGAAAAGGAGGGTATGCAGAGGTGTACAAGGGAACACTGAAAGATGGAGAGAATATTGCAGTGAAGAGGCTAACAAGAACTTGCAGAGATGAGAGGAAAGAGAAGGAGTTTCTAACAGAGATTGGTACAATTGGCCATGTCCACCATAACAATGTTTTGCCTCTTCTTGGTTGTTGTATTGACAGTGGCCTTTACCTTGTTTTTGTGCTCTCTACAAGAGGCTCTGTTGCATCCCTTCTTCACGATGAAAAGATGGATACTTTGGATTGGAAAACAAGGCATAAGATAGCTGTTGGAACTGCACGTGGCCTCCATTACTTGCACAAAGGTTGCAAGAGAAGGATCATCCACCGTGACATTAAGGCATCAAATATTCTTTTGACAGAAGATTTTGAACCTCAGATATCTGATTTTGGATTAGCAAAATGGCTTCCATCTCAATGGAGTCATCATTCAATTGGGCCAATAGAAGGGACATTTGGGCATTTGGCACCAGAATACTATCTGCATGGAGTTGTGGATGAGAAGACAGATGTATTTGCATTTGGTGTGTTCTTGCTTGAACTCATTTCTGGTAGAAAACCAGTTGATGGCTCTCACCAAAGCTTGCATACTTGGGCAAAACCAATATTGAAGAAAGGGGAAGAAGAGAAGCTAGTGGATCCAAGGCTTGAAGGGAAGTACAATGGAGAAGAGTTAAAGAGAATTGCCTTTTCAGCATCCTTGTGCATTCGGGCTTCTTCAATTTGGCGACCAACCATGACTGAGGTACTAGAGGTAATGGAGGGTGGTGAAATTGACAAAGAGAAGTGGGAAATGCCAGAGGAAGAAGAAGAGGAAGATGAAGAGGAAGAGTTTTGGGGTTTTGATGATCTTGAATATGAATATGAATATGACACTTCATTATCAATGTCACTACCTGACTCCACTGCAAGTACATATACTTAG 1143 0.4234 MRYIRTTSLKRLFSFKRRSFEEKSLTRSGSTASEEEQCSSKPSWKCFSYEELFDATNGFSSENLVGKGGYAEVYKGTLKDGENIAVKRLTRTCRDERKEKEFLTEIGTIGHVHHNNVLPLLGCCIDSGLYLVFVLSTRGSVASLLHDEKMDTLDWKTRHKIAVGTARGLHYLHKGCKRRIIHRDIKASNILLTEDFEPQISDFGLAKWLPSQWSHHSIGPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLELISGRKPVDGSHQSLHTWAKPILKKGEEEKLVDPRLEGKYNGEELKRIAFSASLCIRASSIWRPTMTEVLEVMEGGEIDKEKWEMPEEEEEEDEEEEFWGFDDLEYEYEYDTSLSMSLPDSTASTYT 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211451g00020 380 ProSitePatterns Protein kinases ATP-binding region signature. 65 87 IPR017441 GO:0005524
Stsc211451g00020 380 SMART serkin_6 59 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211451g00020 380 PANTHER OS08G0249100 PROTEIN 23 358 IPR046958 -
Stsc211451g00020 380 FunFam Putative receptor-like serine/threonine-protein kinase 26 135 - -
Stsc211451g00020 380 Pfam Protein tyrosine and serine/threonine kinase 62 267 IPR001245 GO:0004672|GO:0006468
Stsc211451g00020 380 Coils Coil 86 106 - -
Stsc211451g00020 380 SUPERFAMILY Protein kinase-like (PK-like) 37 326 IPR011009 -
Stsc211451g00020 380 FunFam Putative receptor-like serine/threonine-protein kinase 137 352 - -
Stsc211451g00020 380 Gene3D Phosphorylase Kinase; domain 1 29 134 - -
Stsc211451g00020 380 Gene3D Transferase(Phosphotransferase) domain 1 137 352 - -
Stsc211451g00020 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Stsc211451g00020 380 ProSiteProfiles Protein kinase domain profile. 59 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211451g00020 Stsc-Chr211451 135374 139070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211451g00020 45 337 Receptor kinase-like Gene Family AT1G60800 46.179 4.83e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc211451g00020 PK_Tyr_Ser-Thr 4.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211451g00020 - - ahf:112697971 675.626