Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211451g00017 ATGGAGTGGGACAGCAACTCGGATCTGAGCGGGGAGGAGGAAGACGAGGGAGCGTTCGACCTCACCGACGACGCCGCCGCCGATGATTGCCCTCTCCCGTTCCCCGTCGAGAACCTTCTTCTCCAGACCGCGCCCTGCGGATTCGTCGTTACGGACGCACTCGAGCCGGACCACCCTATCATCTACGTCAACACCGTCTTCGAGATCGTTACCGGTTACCGCGCCGAGGAGGTTCTCGGTCGCAATTGTCGCTTCTTGCAATGTCGAGGTCCATTCGCCAAGAGAAGGCATCCATTGGTGGAATCAGCGGTAGTTTCAGAAATTAGAAGATGCCTTGAGGAGGGGATCGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTGATGAACAGATTGCGGCTGACGCCTATATTTGGAGATGATGAGACTATAACACATGTAATTGGAATTCAGTTCTTCACAGAGGCAAACGTTGATCTAGGTCCTGTTCATGGTTCGTCACTTAAGGAATCTGCTAAGCCATCTGATCGATTTCGTTCTGTGCCTTCCTCGTTACATCCTCTTTCAGCAGGAGAGCGAAATGTATCTCGTGGAGTGTGTGGGATATTCCAATTGAGTGATGAGGTACTGTCTCTGAAGATACTTGCTCGTTTAACTCCAAGAGATATTGCATCAGTTAGTTCTGTCTGTAGGAGATTGTATGAGCTGACAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAGAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCCGGTGCGAGGAGACTTGGATGGGGTCGGTTGGCAAGGGAATTGACCACCCTTGAAGCAGCAGCGTGGAGGAAGTTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTCAGTGCTTGTGCTGTGGGCAATAGAGTTGTCCTGTTTGGAGGTGAAGGGGGTTTGCTCAACGATGTGTTTGTTCTGGACCTGGATGCTAAGCCTCCAACTTGGCGTGAAATTTCAGGATTGGCACCACCCCTTCCAAGGTCGTGGCATAGCTCCTGTACTCTAGATGGTACTAAGTTGATTGTTTCTGGGGGCTGTGCAGACTCTGGAGTGTTATTGAGTGACACTTTCCTCCTTGATTTGTCCATGGAGAAACCTGTCTGGAGAGAGATACCAGTGACATGGACTCCACCTTCTAGACTGGGCCACACATTGTCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGACCCCTGCGTTTTCGTTCCAGTGATGTATTCACGATGGATCTAAGTGAGGAGGAACCTTGTTGGAGATGTGTAACGGGGAGTGGAATGCCCGGTGCCGGGAATCCCGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTCAGTCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCTGGTCTTCATTCTGCCTCTCAGCTTTATATTCTTGATCCAACTGATGAGAAGCCCACGTGGAGGATTCTAAATGTACCCGGTCACCCTCCGAGATTCGCTTGGGGACACAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTGGGTGGTCAAACCGGGGAGGAATGGATGCTAAGCGAGCTCCATGAACTTTCTCTTGCGAGTTCTGTCATATAG 1692 0.5041 MEWDSNSDLSGEEEDEGAFDLTDDAAADDCPLPFPVENLLLQTAPCGFVVTDALEPDHPIIYVNTVFEIVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVESAVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIFGDDETITHVIGIQFFTEANVDLGPVHGSSLKESAKPSDRFRSVPSSLHPLSAGERNVSRGVCGIFQLSDEVLSLKILARLTPRDIASVSSVCRRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGHPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211451g00017 563 SUPERFAMILY F-box domain 195 268 IPR036047 GO:0005515
Stsc211451g00017 563 Gene3D - 462 562 IPR015915 GO:0005515
Stsc211451g00017 563 ProSiteProfiles PAS repeat profile. 40 115 IPR000014 -
Stsc211451g00017 563 CDD PAS 44 154 IPR000014 -
Stsc211451g00017 563 NCBIfam PAS domain S-box protein 40 154 IPR000014 -
Stsc211451g00017 563 FunFam Adagio protein 1 203 250 - -
Stsc211451g00017 563 Gene3D - 203 250 - -
Stsc211451g00017 563 FunFam Adagio protein 1 34 166 - -
Stsc211451g00017 563 Gene3D PAS domain 30 166 - -
Stsc211451g00017 563 CDD F-box_AtADO-like 205 251 - -
Stsc211451g00017 563 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 322 560 - -
Stsc211451g00017 563 Pfam Kelch motif 471 518 IPR011498 GO:0005515
Stsc211451g00017 563 Pfam Kelch motif 404 455 IPR011498 GO:0005515
Stsc211451g00017 563 FunFam Putative LOV domain-containing protein 427 562 - -
Stsc211451g00017 563 Pfam F-box-like 214 252 IPR001810 GO:0005515
Stsc211451g00017 563 SUPERFAMILY Kelch motif 288 557 IPR015915 GO:0005515
Stsc211451g00017 563 ProSiteProfiles F-box domain profile. 217 250 IPR001810 GO:0005515
Stsc211451g00017 563 Pfam PAS domain 45 155 IPR000014 -
Stsc211451g00017 563 Gene3D - 279 461 IPR015915 GO:0005515
Stsc211451g00017 563 SUPERFAMILY PYP-like sensor domain (PAS domain) 44 155 IPR035965 -
Stsc211451g00017 563 Pfam Galactose oxidase, central domain 311 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211451g00017 Stsc-Chr211451 118672 123278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211451g00017 41 156 AGC Kinase Gene Family AT5G58140 33.621 2.42e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211451g00017 K12115 - gmx:100301887 669.463