Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211451g00013 ATGTACCCTATTCAGCACCGCAAATATAGAGATGGAATTGACAACCTGTTGGTCCTCTTGATTGGTGGAATCCCCATTGCTATGCCCACTGTGTTGTCTGTCACAATGGCCATTGGTTCTCACAGGCTCTCTCAGCAGGGTGCTATCACCAAGCGTATGACCGCCATTGAAGAAATGGCCGGCATGGATGTCCTCTGCAGTGACAAGACTGGGACACTCACCCTGAACAAGCTGAGCGTTGACAGGAACTTGATTGAGGTTTTTGCCAAGGATGTTGACAAGGAACATGTTATCCTTCTTGCTGCAAGGGCTTCCAGGACTGAAAACCAGGATGCAATAGATGCTGCCATTGTTGGAATGCTTGCTGACCCAAAAGAGGCAAGGGCTGGGGTAAGAGAGGTTCACTTCTTGCCATTCAATCCAGTTGACAAGAGAACAGCTTTGACTTACATTGATGCTGATGGAAATTGGCACAGGGCAAGCAAAGGTGCTCCTGAGCAGATCATTGCCTTGTGTAACCTTAGGGAAGATGCTAAGAAAAAGTGCCATGCTATTATTGACAAGTTCGCAGACAGAGGGCTTCGTTCCCTCGCTGTTGCTAGACAGGAAGTTCCAGAGAAAACAAAGGAAAGTGCCGGTGGTCCATGGCAGTTTGTTGGTTTGTTGCCACTGTTTGATCCCCCAAGACATGACAGTGCTGAGACTATCCGACAAGCTCTTAACCTTGGCGTAAATGTCAAGATGATTACGGGTGATCAACTTGCCATTGCTAAGGAGACCGGCCGGAGACTTGGGATGGGAACAAATATGTATCCATCTGCTTCCTTACTTGGTCAAGACAAGGATGCAAGTATTGCTGCACTTCCAGTGGAAGAGCTTATTGAGAAGGCTGATGGATTTGCTGGAGTATTTCCAGAACACAAATATGAAATTGTCAGGAAGTTACAAGAGAGGAAGCACATTTGTGGAATGACCGGAGATGGTGTAAATGATGCTCCTGCTTTAAAGAAGGCTGATATTGGAATTGCTGTTGCTGATGCCACTGATGCTGCAAGAAGTGCTTCTGATATTGTCTTGACTGAACCAGGATTGAGTGTTATTATTAGTGCAGTCTTAACCAGCAGAGCTATTTTCCAAAGAATGAAGAACTATACGATTTATGCAGTATCTATCACCATCCGTATAGTGTTTGGCTTCATGTTCATTGCACTAATCTGGAAATTCGACTTCTCACCTTTCATGGTTTTGATCATTGCCATTCTAAATGATGGAACAATCATGACAATTTCGAAGGATCGTGTGAAGCCATCTCCCTTGCCTGACAGCTGGAAATTGCGAGAAATATTCGCCACTGGGACTGTTCTTGGAAGTTACTTGGCACTTATGACTGTCATATTCTTCTGGGCAATGAAGGAAACTAGCTTCTTCCCTGACAAATTTGGAGTTAGACACCTGAATCATGATGAAATGATGTCTGCTCTGTATCTACAAGTCAGTATTGTTAGCCAGGCTTTGATCTTTGTGACTCGTTCACGCAGCTGGTCCTTCGTTGAACGCCCCGGATTGTTATTGATAACTGCTTTTGTTATTGCTCAGCTGGTAAGTGTGATGCTTCATTTGATCTCTCAGATTGCAGACATTAATAGGCATGCAAAACTGATATATGGTCCAAAATAG 1677 0.4448 MYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFAKDVDKEHVILLAARASRTENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDADGNWHRASKGAPEQIIALCNLREDAKKKCHAIIDKFADRGLRSLAVARQEVPEKTKESAGGPWQFVGLLPLFDPPRHDSAETIRQALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGTVLGSYLALMTVIFFWAMKETSFFPDKFGVRHLNHDEMMSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLITAFVIAQLVSVMLHLISQIADINRHAKLIYGPK 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211451g00013 558 Pfam haloacid dehalogenase-like hydrolase 62 339 - -
Stsc211451g00013 558 FunFam Plasma membrane ATPase 218 373 - -
Stsc211451g00013 558 Gene3D - 222 292 IPR023214 -
Stsc211451g00013 558 PANTHER CALCIUM-TRANSPORTING ATPASE 4 542 - -
Stsc211451g00013 558 FunFam Plasma membrane ATPase 78 225 - -
Stsc211451g00013 558 PRINTS H+-transporting ATPase (proton pump) signature 325 341 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211451g00013 558 PRINTS H+-transporting ATPase (proton pump) signature 356 381 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211451g00013 558 PRINTS H+-transporting ATPase (proton pump) signature 297 313 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211451g00013 558 PRINTS H+-transporting ATPase (proton pump) signature 182 200 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211451g00013 558 PRINTS H+-transporting ATPase (proton pump) signature 495 516 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211451g00013 558 FunFam ATPase 4 plasma membrane-type 310 549 - -
Stsc211451g00013 558 Gene3D - 80 221 IPR023299 GO:0000166
Stsc211451g00013 558 NCBIfam HAD-IC family P-type ATPase 300 414 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211451g00013 558 NCBIfam plasma-membrane proton-efflux P-type ATPase 2 538 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc211451g00013 558 SFLD p-type atpase 48 377 IPR044492 -
Stsc211451g00013 558 SUPERFAMILY HAD-like 62 372 IPR036412 -
Stsc211451g00013 558 PRINTS P-type cation-transporting ATPase superfamily signature 220 231 - -
Stsc211451g00013 558 PRINTS P-type cation-transporting ATPase superfamily signature 325 344 - -
Stsc211451g00013 558 PRINTS P-type cation-transporting ATPase superfamily signature 242 252 - -
Stsc211451g00013 558 PRINTS P-type cation-transporting ATPase superfamily signature 66 80 - -
Stsc211451g00013 558 PRINTS P-type cation-transporting ATPase superfamily signature 348 360 - -
Stsc211451g00013 558 Gene3D - 1 79 - -
Stsc211451g00013 558 ProSitePatterns E1-E2 ATPases phosphorylation site. 68 74 IPR018303 -
Stsc211451g00013 558 SFLD C1.7: P-type atpase like 48 377 - -
Stsc211451g00013 558 Gene3D - 326 554 - -
Stsc211451g00013 558 SUPERFAMILY Calcium ATPase, transmembrane domain M 4 545 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211451g00013 Stsc-Chr211451 79026 81470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211451g00013 1 538 Primary Pumps ATPases AT2G18960 86.481 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211451g00013 K01535 - gmx:100816905 988.793