Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211451g00001 ATGGCGCATACGGAGGAAGAGAAGGGGAAGAAGAAGAAGTGGGAGAAGAGCTACTTCGATGTGATGGGATTGTGCTGCTCCTCGGAGGTGCCGCTCATAGAGAATATACTCAAACCTCTCCATGGAATCAAGGAGGTTTCAGTCATTGTTCCAACTCGCACTGTTATTGTTGTTCATGACTCTCTCATCATTTCTCAGCTCCAAATCGTTAAGGCTCTTAATCAAGCAAGACTAGAAGCAAATATCAGAGTGTATGGGGACCAAAAGCACCAAAAGCAATGGCCAAGCCTATACTCAATTGTGTGCGGTTTGCTACTTTTGCTTTCTTTGCTCAAGTTCGTGTACCATCCATTGCAATATCTCGCCCTCGGAGCGGTCGCCGCCGGTATATTTCCAATCGCCTGGAAGGCTGTTGTCTCCATCCAGAACCTTAGGCTTGACATTAACATTCTCATGATCATAGCAGTTATTGGGACAATTGCTATGAATGATTATTTAGAAGCAGGAACGATAGTTTTTCTCTTCTCCATTGCTGAATGGCTTGAATCCAGGGCAAGCCACAAGGCAAATGCGGTTATGTCATCACTGATGAACATAGCTCCTCAAAAAGCAGTGATAGCCGAAACAGGAGAGGTGGTGGATGCTGATGAGGTAAAAGTCAACACTATTTTAGCAGTGAAGGCAGGGGAAGTGATCCCAATTGATGGTGTTGTTGTTGATGGAATCTGTGAGGTTGACGAAAAAACTTTGACAGGGGAATCTTTCCCAGTAGCAAAACAAAAAGACTCTACTGTTTGGGCTGGGACCATTAACTTAAATGGTTATGTTAGTGTTAAAACTACTGCATTGGCTGAGGATTGTGTTGTGGCTAAAATGGCAAAGCTTGTAGAAGAAGCTCAAAACAGCAAAACCAGCACTCAGAGATTGATTGACAAGTTTGCCAAATTTTACACCCCTGCTGTTGTAATTATATCAGCACTTGTAGCGGTTATTCCAATTGCGCTAAAAGTACACGACAAGAAACACTGGCTTCACTTTGCACTTGTTGTGTTAGTAAGTGCATGCCCATGTGCACTTATCCTTTCAACACCAGTTGCTACTTTTTGTGCCTACACAAAAGCAGCTACTTCTGGTCTCCTCATCAAAGGTGGTGATTATCTTGAAACACTTGCAAAAATTAAGGTCATGGCTTTCGACAAAACTGGCACCATAACAAAGGGGGAGTTTGTGGTGACAAATTTTGTCTCTCTTTCAGATGACATTGATTTGAGCACGTTGCTTTACTGGGTGTCAAGTATTGAGAGTAAATCAAGTCATCCATTGGCTGCAGCTATTGTTGATTATGGGAGGTCCCTCTCCATTGAACCAAAGCCAGAAAATGTTACAGAATTTGAGAATTTTCCTGGAGAAGGAATATGTGGAAAAATTGAAGAGAGAACTCTTTACATTGGAAACAAAAAAATTGCAACTAGAGCTGGCTCAGAAACAGTTCCTGCAATGCAAGGTCAAATAGGAAAGACCACAGGATACATATACTGTGGAGCAACCCCAGTTGGATTCTTCTCTCTATCAGATGCTTGTCGAACCGGTGTTCCGGATGCAATAGCTCAGCTCAAGTCATTGGGAATCAAAACCGCTATGCTCACTGGAGACAGTCAAGGAGCTGCAATGCAAGCACAGGAACAGCTAGGGAATGCTCTGGAGTTGATCCATGCAGAACTTTTGCCAGAAGACAAGTTAAAGATCATCACAGAATTCAAGAAGGAAGGTCCAACAGCAATGGTTGGAGATGGTTTGAACGACGCACCAGCGTTAGCTACTGCTGATATAGGAATATCAATGGGGATCTCAGGTTCTGCACTGGCAAGTGAGACTGGAAATATAATTCTTATGTCAAATGACCTTAGGAAGATTCCGGAAGTGATTAAGCTTGCGAAAAAGTCGCATAGGAAAGTGATAGAGAATATTTTTTTGTCAGTGATTACCAAGGCTGCAATTATTGGTTTGGCTATTGGTGGTCATCCACTTGTTTGGGCTGCAGTTCTTGCTGATGTTGGAACATGTTTAGTTGTCATCTTGAATAGCATGTTACTTCTTAGAGGAGAACGTAATCATGGAAAACACAATCATGGAGAACACAAGCATGGGGGACACAACCACGAAAAACATAACCATGGAACACACAAACATGGAGGACACAAGCATGGTGAACAGAAGCATGGAGGAAAATGTTGTAAACCTTCCCCTGAAGTTCATGTCCATAAAGATGTATGTGTTGGAAAAGATGGTGGCTCCTCTCATCATCATGGAACATCCTCTCATCATCATCACCACCACCACCACCACCATCATCATGAACAACATCAACATAAGCATCATAGCCATAAGCATTGTGGCTCAGAGGAGACAAAACAGGTGACTCAGCCTCAGAAGTGTGCCTCCGAGACGTGTTCCTCAAAGCATCAACCCGGCCCTTCGGATTCAAGATTAGATGGAAGTGTCAAGCATCATAACGTCATGGAAAGTCATGAACATTGTAAGGGAAGAGATGAGTTTCATGAACCGGATCACTGTCATCATGGAAGATGTGAAAAGAGCAAAGAGCAGGCTCATCAGAAGCATGATCATATTGAAAACCATTGTTCAGAAACGCACAATGTTATTCCAAATGCAGAAAACAATACTGCATTACATGGTTCTCATTGCCATGGGGCAGAGCAGTGCCACAAAGATTCTGACATGGTTACTCATGAAAAGGCATCACCACATATTTCTCACCATCACATGATCCATGGTTGTGAAAATCCAAAATGCCACGAATCAGATCGAAATTCAGGTTCTCATTCTGAAATTGAGAAGGCAGGGACAAGTGAGATAACTATTGACATGGATGATGATGTCGAATCGGCCTCAAAGCCCAGCTGCTGCATGGAAGAGAAAGAAAACGATTCGTGCTGCGATGGTTGCCCGGACAAATGTGAAGAACTTCCAGTGGCATGTGACTGCGAGAGCTCGAGTGAGGCACAAGTTATTAGTTCTTGCTGTAGCAGCAATGAGGGATCTACAAAAGAATGCAAAGATTCCACAGTTGTGCATGCTTGTTTTAGTCTAAACAAGAGAGGCTATGGTGGATGCTGCAAGAGTTACATGAAGGAATGCTGTGCCAAGAAGCATGGACATTCAGGTGCTGGTTTTGGAGGAGGTTTGTCAGAGATTATTACAGAATATGTTTAG 3234 0.4307 MAHTEEEKGKKKKWEKSYFDVMGLCCSSEVPLIENILKPLHGIKEVSVIVPTRTVIVVHDSLIISQLQIVKALNQARLEANIRVYGDQKHQKQWPSLYSIVCGLLLLLSLLKFVYHPLQYLALGAVAAGIFPIAWKAVVSIQNLRLDINILMIIAVIGTIAMNDYLEAGTIVFLFSIAEWLESRASHKANAVMSSLMNIAPQKAVIAETGEVVDADEVKVNTILAVKAGEVIPIDGVVVDGICEVDEKTLTGESFPVAKQKDSTVWAGTINLNGYVSVKTTALAEDCVVAKMAKLVEEAQNSKTSTQRLIDKFAKFYTPAVVIISALVAVIPIALKVHDKKHWLHFALVVLVSACPCALILSTPVATFCAYTKAATSGLLIKGGDYLETLAKIKVMAFDKTGTITKGEFVVTNFVSLSDDIDLSTLLYWVSSIESKSSHPLAAAIVDYGRSLSIEPKPENVTEFENFPGEGICGKIEERTLYIGNKKIATRAGSETVPAMQGQIGKTTGYIYCGATPVGFFSLSDACRTGVPDAIAQLKSLGIKTAMLTGDSQGAAMQAQEQLGNALELIHAELLPEDKLKIITEFKKEGPTAMVGDGLNDAPALATADIGISMGISGSALASETGNIILMSNDLRKIPEVIKLAKKSHRKVIENIFLSVITKAAIIGLAIGGHPLVWAAVLADVGTCLVVILNSMLLLRGERNHGKHNHGEHKHGGHNHEKHNHGTHKHGGHKHGEQKHGGKCCKPSPEVHVHKDVCVGKDGGSSHHHGTSSHHHHHHHHHHHHEQHQHKHHSHKHCGSEETKQVTQPQKCASETCSSKHQPGPSDSRLDGSVKHHNVMESHEHCKGRDEFHEPDHCHHGRCEKSKEQAHQKHDHIENHCSETHNVIPNAENNTALHGSHCHGAEQCHKDSDMVTHEKASPHISHHHMIHGCENPKCHESDRNSGSHSEIEKAGTSEITIDMDDDVESASKPSCCMEEKENDSCCDGCPDKCEELPVACDCESSSEAQVISSCCSSNEGSTKECKDSTVVHACFSLNKRGYGGCCKSYMKECCAKKHGHSGAGFGGGLSEIITEYV 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211451g00001 1077 NCBIfam cadmium family heavy metal-translocating P-type ATPase 148 700 - -
Stsc211451g00001 1077 CDD P-type_ATPase_HM 121 697 - -
Stsc211451g00001 1077 NCBIfam heavy metal translocating P-type ATPase 148 698 IPR027256 GO:0006812|GO:0016020|GO:0019829
Stsc211451g00001 1077 MobiDBLite consensus disorder prediction 741 769 - -
Stsc211451g00001 1077 Gene3D - 408 527 IPR023299 GO:0000166
Stsc211451g00001 1077 MobiDBLite consensus disorder prediction 935 960 - -
Stsc211451g00001 1077 SFLD C1.7: P-type atpase like 380 647 - -
Stsc211451g00001 1077 ProSiteProfiles Heavy-metal-associated domain profile. 15 81 IPR006121 GO:0046872
Stsc211451g00001 1077 Pfam haloacid dehalogenase-like hydrolase 393 609 - -
Stsc211451g00001 1077 SUPERFAMILY HMA, heavy metal-associated domain 13 81 IPR036163 GO:0046872
Stsc211451g00001 1077 FunFam Copper-transporting ATPase 1, putative 186 300 - -
Stsc211451g00001 1077 Gene3D - 186 300 - -
Stsc211451g00001 1077 Gene3D - 388 646 IPR023214 -
Stsc211451g00001 1077 PRINTS P-type cation-transporting ATPase superfamily signature 619 631 - -
Stsc211451g00001 1077 PRINTS P-type cation-transporting ATPase superfamily signature 595 614 - -
Stsc211451g00001 1077 PRINTS P-type cation-transporting ATPase superfamily signature 246 260 - -
Stsc211451g00001 1077 PRINTS P-type cation-transporting ATPase superfamily signature 397 411 - -
Stsc211451g00001 1077 PRINTS P-type cation-transporting ATPase superfamily signature 541 551 - -
Stsc211451g00001 1077 FunFam Putative cadmium/zinc-transporting ATPase 3 11 84 - -
Stsc211451g00001 1077 NCBIfam HAD-IC family P-type ATPase 171 673 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211451g00001 1077 SUPERFAMILY HAD-like 396 696 IPR036412 -
Stsc211451g00001 1077 SUPERFAMILY Calcium ATPase, transmembrane domain M 148 391 IPR023298 -
Stsc211451g00001 1077 MobiDBLite consensus disorder prediction 704 833 - -
Stsc211451g00001 1077 Gene3D - 10 84 - -
Stsc211451g00001 1077 PRINTS Copper-transporting ATPase signature 188 206 - -
Stsc211451g00001 1077 PRINTS Copper-transporting ATPase signature 573 590 - -
Stsc211451g00001 1077 PRINTS Copper-transporting ATPase signature 319 333 - -
Stsc211451g00001 1077 PRINTS Copper-transporting ATPase signature 630 644 - -
Stsc211451g00001 1077 ProSitePatterns E1-E2 ATPases phosphorylation site. 399 405 IPR018303 -
Stsc211451g00001 1077 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 10 701 - -
Stsc211451g00001 1077 FunFam Putative cadmium/zinc-transporting ATPase 3 408 527 - -
Stsc211451g00001 1077 SFLD p-type atpase 380 647 IPR044492 -
Stsc211451g00001 1077 MobiDBLite consensus disorder prediction 803 826 - -
Stsc211451g00001 1077 MobiDBLite consensus disorder prediction 707 740 - -
Stsc211451g00001 1077 MobiDBLite consensus disorder prediction 770 795 - -
Stsc211451g00001 1077 Pfam E1-E2 ATPase 207 375 - -
Stsc211451g00001 1077 SUPERFAMILY Calcium ATPase, transduction domain A 211 296 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211451g00001 Stsc-Chr211451 7348 15483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211451g00001 12 712 Primary Pumps ATPases AT4G30110 69.886 0.0 1027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211451g00001 K01534 - gmx:100817567 1289.25