Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211450g00037 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTCAAGAGAGGCCTTTGGTCCCCTGAGGAAGACGAGAAACTCATTCGTTACATTACTACTCATGGCTATGGCTGTTGGAGTGAAGTCCCTGAGAAAGCAGGGCTTCAAAGGTGTGGTAAGAGTTGTAGGCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACACCTGAGGAGGAGAAGTTAATCATTAGTCTCCACGGTGTCGTTGGCAATAGATGGGCTCACATTGCTAGCCACTTGCCTGGTAGAACTGATAATGAAATTAAGAACTATTGGAATTCATGGATCAAGAAGAAGATAAGGAAGCCATCCTCACTCTCTTCTGCACCACCTACAAATAATGCATCTTCACTAACTAATAGTGTTGATCATTCTTCTCATCACCACTTCAGCTATAATTATACTAATTCAAATCAACTACTAGATCATCATCACCACTTTGGAGGCAACAACAACAACAACCAAGATAATCTAACACCAAAGCAGCAACCACTTCATCATCATCAAGAATCCTTATTCTCTTCAACATACCCACTATTTATGTTTGACACTAGTTCACTAGATGCCACCACCACAACATGTTCTACAACAACAGACAACAACACCTTAAGAGTTGATCACATATTCCAAGATGCTAATGTTGGATTGAGTTCTGAAACATGGAACTTGACCCACCACAATCACAACCAACAAGTTCATCATCAACCACTTGCTCGTCCATCAGCAACAGCTTTCACGGTTGCTGTGGGATTGGACGCAACCAATTATCTGCCACCATTGATAGAGAACGTGGAGAGCATGGTACCGGTTGAGGTGCAATCCTGTAGCATGGAGGATGTAGGAGATGCAGCTACTCTGGAGTGCTTACAGTTGCAGAGGCACCAAGATCATGAACAGTTAAATGCATGGGTTGAATCCACAAACGTACATCAACAATGTCCTAGCTTTCTTTTTTGGGACAATGTTGTTGATGCCCAAATTGGTGGTGGCCAAGAAGAACTTGCACCAAATTCTTCATCCAATAAAGCTAATACTCTTTCTCCTTTTCCTTTGTGA 1104 0.423 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSSLSSAPPTNNASSLTNSVDHSSHHHFSYNYTNSNQLLDHHHHFGGNNNNNQDNLTPKQQPLHHHQESLFSSTYPLFMFDTSSLDATTTTCSTTTDNNTLRVDHIFQDANVGLSSETWNLTHHNHNQQVHHQPLARPSATAFTVAVGLDATNYLPPLIENVESMVPVEVQSCSMEDVGDAATLECLQLQRHQDHEQLNAWVESTNVHQQCPSFLFWDNVVDAQIGGGQEELAPNSSSNKANTLSPFPL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211450g00037 367 CDD SANT 69 112 IPR001005 -
Stsc211450g00037 367 MobiDBLite consensus disorder prediction 157 185 - -
Stsc211450g00037 367 Gene3D - 6 66 - -
Stsc211450g00037 367 MobiDBLite consensus disorder prediction 348 367 - -
Stsc211450g00037 367 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc211450g00037 367 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc211450g00037 367 CDD SANT 17 61 IPR001005 -
Stsc211450g00037 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc211450g00037 367 SMART sant 66 114 IPR001005 -
Stsc211450g00037 367 SMART sant 13 63 IPR001005 -
Stsc211450g00037 367 MobiDBLite consensus disorder prediction 121 138 - -
Stsc211450g00037 367 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc211450g00037 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc211450g00037 367 FunFam Transcription factor MYB26 68 142 - -
Stsc211450g00037 367 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc211450g00037 367 PANTHER MYB DOMAIN PROTEIN 55 1 245 - -
Stsc211450g00037 367 MobiDBLite consensus disorder prediction 119 138 - -
Stsc211450g00037 367 Gene3D - 68 140 - -
Stsc211450g00037 367 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc211450g00037 367 FunFam MYB transcription factor 6 66 - -
Stsc211450g00037 367 MobiDBLite consensus disorder prediction 346 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211450g00037 Stsc-Chr211450 246105 247922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211450g00037 1 338 MYB Transcription Factor Family AT1G63910 50.562 8.90e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211450g00037 Myb_DNA-binding 5.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211450g00037 K09422 K02947 gmx:100803556 435.647