Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211450g00032 ATGGTTTCATCATCAAGTGCTGGATTCTGCTGCAGCACCTACTCCGATAACCCAACCCCCAACAACCAGATCCATGGGGGAGGAGTAGGAGGGGCCTTTCTCTCTGACCCAGACATGGACATCAAGTGGAAAACCTTGTTGGCTAACAACAACAACAACAACGAACCACCACCTCCTACTTCTTTTGATCTAATACTTCCCCCTCATCATCACCAAGGCCTTTCACTCTCTCTTAACTCAAACAGTCCTTCTTCAATTGCTCTCCAATCTTTCCACCTAAGACAACAACACCATGAGATGCCTCTCATCCATCATCAACAACAATCTCCAAATCTGTATCATCAACCCCATTACTCCCTCAAGGGATCCAGGTTCTTGATACCCGCACAGCACCTTCTCAACGAATTCTGTAGCCTAGGAACCAAGCAACAACTCAACAATAATAATCAACCCATGAAGCGCCGTATCAATTCCGCCGACAATAATCCCCCAGCTGTTACCTCTCTAGAGTTCGTTGAACTGCAGAAGAGAAAGGGCAAGCTCCTTGCCATGCTCCAAGAGGTGGATAGAAGATACTCGCACTACTGCAATCAGATGAAGGGAGTGGTGGCCTCATTCGAGGCGGTGGCCGGGGAGGGTGCGGCCACCGTGTACTCGGCACTTGCGCTCAAGGCCATGTCTCGGCACTTCAGGTGCTTGAAGGATGGGATAGTGGAACAGTTAGAGGCCACAAGGAAGGGGATGGGAGAGAAGGATCCAATTGCACCGGGCACCACCAAGGGCGAAACCCCCACCCTCAGAATCATTGACCAGGCTTTGAGACAGCAAAGGGCTTTTCATCAACTCTCCTCCATGGAACCCCATCCCTGGAGACCCCAACGTGGCCTCCCTGAACGTTCCGTCTCTCTTCTCCGCGCTTGGCTTTTCGAGCATTTCCTTCACCCGTACCCAAGCGACGTTGATAAACACATTTTAGCACGGCAAACTGGTCTGTCTAGAAGCCAGGTTTCAAATTGGTTTATCAATGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAAGAAGAGAAGGAGGAGGCTGCCTCCGAGGGAGGACCCACCACCAACACTACTACTCAAGATTTTCAAAACCTATCTTCTCCAAATTCAGATCACAAGCCTCGCCTACTTCGAATCGACTCCGAATGCATGTCCTCAATCATCAACAACAACCACAACAACCCTCAGCAAGATGAGGAGGAGGAATATTTAGGGCGAGGAGTGGTGGCAGACACCTTTGGATCGGTGGAGATTGATTTCTCATCATCATCATCATCATACCCTCACAATAACGCTGTTACTGGAGGCGCGGTTTCTTTGACGCTAGGGTTACAGCAGCACGCTGGAAATGGGGTGAGCTTGGCTTTCCCGCCACAAACTCATCATCATCATCATGACGCCGAGGCCTCCATGTTCTACTCATCAAGGGATCACATGATTATTGAACCAGTTCACTACTCTCTTTTGGATGCCGAACCACAAACCATATCCTACAGCAGGAATTTCATGGGGAGTGGCACCCAATTGCTTCATGACTTGGCCGGATAG 1599 0.4984 MVSSSSAGFCCSTYSDNPTPNNQIHGGGVGGAFLSDPDMDIKWKTLLANNNNNNEPPPPTSFDLILPPHHHQGLSLSLNSNSPSSIALQSFHLRQQHHEMPLIHHQQQSPNLYHQPHYSLKGSRFLIPAQHLLNEFCSLGTKQQLNNNNQPMKRRINSADNNPPAVTSLEFVELQKRKGKLLAMLQEVDRRYSHYCNQMKGVVASFEAVAGEGAATVYSALALKAMSRHFRCLKDGIVEQLEATRKGMGEKDPIAPGTTKGETPTLRIIDQALRQQRAFHQLSSMEPHPWRPQRGLPERSVSLLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEEAASEGGPTTNTTTQDFQNLSSPNSDHKPRLLRIDSECMSSIINNNHNNPQQDEEEEYLGRGVVADTFGSVEIDFSSSSSSYPHNNAVTGGAVSLTLGLQQHAGNGVSLAFPPQTHHHHHDAEASMFYSSRDHMIIEPVHYSLLDAEPQTISYSRNFMGSGTQLLHDLAG 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211450g00032 532 ProSiteProfiles 'Homeobox' domain profile. 287 350 IPR001356 GO:0003677
Stsc211450g00032 532 SMART HOX_1 290 354 IPR001356 GO:0003677
Stsc211450g00032 532 CDD homeodomain 290 351 IPR001356 GO:0003677
Stsc211450g00032 532 MobiDBLite consensus disorder prediction 367 388 - -
Stsc211450g00032 532 Pfam Associated with HOX 120 237 IPR006563 -
Stsc211450g00032 532 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 90 375 - -
Stsc211450g00032 532 SMART prehox3 114 239 IPR006563 -
Stsc211450g00032 532 FunFam BEL1-like homeodomain protein 4 293 355 - -
Stsc211450g00032 532 MobiDBLite consensus disorder prediction 360 391 - -
Stsc211450g00032 532 SUPERFAMILY Homeodomain-like 291 356 IPR009057 -
Stsc211450g00032 532 Gene3D - 293 355 - -
Stsc211450g00032 532 Pfam Homeobox KN domain 307 346 IPR008422 GO:0003677|GO:0006355
Stsc211450g00032 532 Coils Coil 142 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211450g00032 Stsc-Chr211450 193059 195682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211450g00032 15 531 Homeobox Transcription Factor Family AT5G41410 41.522 5.64e-118 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc211450g00032 POX 4.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211450g00032 - - adu:107479887 702.975