Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211450g00030 ATGGGTTTCCCAGTGGGTTACACAGAGCTTCTCTTCCCAAAGCCTATTCTCCAAATCCTCTCCCTATTGGGTTTCATAAGAAAGTTGATCTGCACCATCTTTGCATACATGGGGCTCCCAAACTTCCTGGAAGCAGAGACGGATAACACAATGCCGCGGTTCCGCTCTGTTTCGGAGCTTCTGATACAAGAGATCCTTCCGGTGGTGAAGTTCTCGGAGGTGGTGGAGGGGCCTGAGAGGTGCGCGGTGTGCCTGACGGACTTCGAGGAGGAGGACGAGATCCGGAGGCTGGCGAACTGCAGGCACGTGTTCCACCGAGGTTGTGTGGACCGTTGGATGGGTTATGATCAGAGCACGTGCCCTCTCTGCAGGACGCCTTTCATTCCTGATGAATTCTTCAGTAACGACCTCTGGGCTGCTTCTGCCATCCCCGAATTTCATGCTTCTTAA 450 0.5356 MGFPVGYTELLFPKPILQILSLLGFIRKLICTIFAYMGLPNFLEAETDNTMPRFRSVSELLIQEILPVVKFSEVVEGPERCAVCLTDFEEEDEIRRLANCRHVFHRGCVDRWMGYDQSTCPLCRTPFIPDEFFSNDLWAASAIPEFHAS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211450g00030 149 ProSiteProfiles Zinc finger RING-type profile. 81 124 IPR001841 -
Stsc211450g00030 149 Pfam Ring finger domain 80 124 IPR001841 -
Stsc211450g00030 149 CDD RING-H2_RHA1-like 79 127 - -
Stsc211450g00030 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 130 IPR013083 -
Stsc211450g00030 149 SUPERFAMILY RING/U-box 61 130 - -
Stsc211450g00030 149 SMART ring_2 81 123 IPR001841 -
Stsc211450g00030 149 PANTHER RING ZINC FINGER PROTEIN-RELATED 58 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211450g00030 Stsc-Chr211450 173660 174206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211450g00030 1 142 C3H Transcription Factor Family AT1G63840 56.129 1.13e-51 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211450g00030 K16281 - jre:109014495 210.305