Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211450g00022 ATGGCAGGATGGTCAACTTGGTCAAATGGGTCGTCCTTAGATTTAAATCAAGTTGAGATTTTTGATGTATGTAATGGTAATGACTGTAGGAATGTAAAAGATCTCGCTGATAATGCTGACCATGACAAAGTTAAAACCTTGTTTGATAAAGTTTTTCCGGTATACCTAAAGGAGAATTGTTCTCATGCTGTTGTTCGGCCTATGCCGGTTTTGCTGGGCGATGGACAAGCAGTGGATTTGTACAAACTCTTCTCTCTTGTGAAGGAAATAGGGGGATATGATTTTGTGTCGAGAAACGGATTGTGGGGTTATGTGGCAAAGGAACTGGGTTTGAACCACCAAGTTTTGGCATCGATGAAATTAATTTTTGATAAGTATCTGAATGATTTTGAAGAATGGCTCGGGAAGACTTTTAAAGAGAAACGTTTCAGAAACGGAAATCATGGGTGTGATTGGGGTTTTAAGTCATTGCCATTAGAGCTAGAGAAAGAATTGAGAAGCCTATTACTAAACCTAAAGGATAACGATGATGGGCTTGTCAACTTGGAATCAAATGCAATAAGCGAGTATATTGATTTGGTTAACCACAAGGAAGATACAAATTTATTGGACACCGAAAATCAGAAAATAAATACATATGGTGATGTCCAACTTTCCAATGTTGATGATGACGAAAAAACTTGTAAAAATGTTAAGGATGACTCTGTCACCTTGAGTACCTTGATTGCTGAGAATGGAGGTGGCTCTCGCAAGCGGAAACGGGAACCGTTATCTGGAATGCTGAACTGGGTTAGGCAAGTTGCGAAGCATCCTCTTGCTCCTTTACAGCAAACATTACCAAAACCATCAAAGTGGAAGGAGTATAAAGGCAATGACTTTTTCATCCAGTTACTGAGGGCAAGAGAGGCTCGGTTGGTGAAACCAGGTGCACAACCTAACAATGAAACATCTTCTTCACAGAAGGCGAAGATGTGCCCAGATATGTACAAGGATCATGTTGCACCTCATCACCATTCTGCTGCAAGACTGAGATGTAGTGAAAGGCTGCCAGCACCTGTTAAATCTCGCACATGCTCTTGTTGCAATTCATGTTCTCCCAACGGGAAGAAATTAACAAGTTCAGTCAATACAAAGCCCAAAAATTGTTTCCCAGATAAAACAACTTCAATATCATGTTCTCCCAATGGGAAGAAATTAACAAGTTCAGTCAATACAAAGGCCAAAAATTGTTCCCCAGATAAAACAACTGCAATAGTAGATGCATCGACTGCAAGGACAATGACTGAACAGTCTGGAGAAGATTTTATCGAAAAGCACGTTTCAGTGGGTCCTCTTTATCAAGCAGATGTCCCAGAATGGACAGGTGAAGTTTGTGAGAGTGACTCAAAGTGGTTAGGCACTCAAGTATGGACTCCGAAACATGACTTAGACCTCCCAAGTGAAAAGGATCTTGTAGGGAGAGGAAGACATGGCAATTGTGATTGTCATTTTAAAGGTTCTGTTGAGTGTGTTAGATTTCATATTGCTGAAAGCAGGATGAAATTGAGGCGCGACTTGGGTTCTGCATTTTACCTTTGGGGATTCAATCGCATGGGTGAGGAAATTTCGCTTCAATGGACAGCTGAAGATGAAAAGAGATTTAAGGATTTGATGAGTTTGAGTTTTCCATCTCAAAACAAGTCTTTCTGGAGCAGCAAATCCAGATACTTTCCAGACAAGACGAGAAGGGACATGGTGAGTTATTACTTCAATGCATATCTTATTCAACTAAGAAGCTATCAGAACCGCGTGACTCCGAATAATGTTGATAGTGATGAAGATGAAGTGGAATTTGGATCTTTTAGCGAAGGTTTTGGGATGGGAGCTCTCAAAATCCCAGGCTCCAATTTCCTGGAGTGTTCACAGAACAAGCAATGCACTGATTTGGATTAA 1932 0.4058 MAGWSTWSNGSSLDLNQVEIFDVCNGNDCRNVKDLADNADHDKVKTLFDKVFPVYLKENCSHAVVRPMPVLLGDGQAVDLYKLFSLVKEIGGYDFVSRNGLWGYVAKELGLNHQVLASMKLIFDKYLNDFEEWLGKTFKEKRFRNGNHGCDWGFKSLPLELEKELRSLLLNLKDNDDGLVNLESNAISEYIDLVNHKEDTNLLDTENQKINTYGDVQLSNVDDDEKTCKNVKDDSVTLSTLIAENGGGSRKRKREPLSGMLNWVRQVAKHPLAPLQQTLPKPSKWKEYKGNDFFIQLLRAREARLVKPGAQPNNETSSSQKAKMCPDMYKDHVAPHHHSAARLRCSERLPAPVKSRTCSCCNSCSPNGKKLTSSVNTKPKNCFPDKTTSISCSPNGKKLTSSVNTKAKNCSPDKTTAIVDASTARTMTEQSGEDFIEKHVSVGPLYQADVPEWTGEVCESDSKWLGTQVWTPKHDLDLPSEKDLVGRGRHGNCDCHFKGSVECVRFHIAESRMKLRRDLGSAFYLWGFNRMGEEISLQWTAEDEKRFKDLMSLSFPSQNKSFWSSKSRYFPDKTRRDMVSYYFNAYLIQLRSYQNRVTPNNVDSDEDEVEFGSFSEGFGMGALKIPGSNFLECSQNKQCTDLD 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211450g00022 643 ProSiteProfiles ELM2 domain profile. 438 484 IPR000949 -
Stsc211450g00022 643 SMART ARID_2 39 131 - -
Stsc211450g00022 643 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 38 640 - -
Stsc211450g00022 643 Pfam ELM2 domain 442 476 IPR000949 -
Stsc211450g00022 643 ProSiteProfiles ARID domain profile. 42 135 IPR001606 GO:0003677
Stsc211450g00022 643 SUPERFAMILY ARID-like 47 134 IPR036431 GO:0003677
Stsc211450g00022 643 SMART bright_3 43 136 IPR001606 GO:0003677
Stsc211450g00022 643 CDD ARID 45 131 - -
Stsc211450g00022 643 Gene3D - 28 144 IPR036431 GO:0003677
Stsc211450g00022 643 Pfam ARID/BRIGHT DNA binding domain 66 131 IPR001606 GO:0003677
Stsc211450g00022 643 SMART ELM2_2 440 490 IPR000949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211450g00022 Stsc-Chr211450 140716 144630 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc211450g00022 ARID 5.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211450g00022 - - gmx:100819320 684.485